PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07590
Common NameGSCOC_T00016753001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 221aa    MW: 23493.2 Da    PI: 8.836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.65e-212473255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAa+a++aa+++++g
  Cc05_g07590 24 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDAAAREFRG 73
                 69*******.**********965...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-402487IPR001471AP2/ERF domain
PfamPF008474.0E-142473IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-222481IPR016177DNA-binding domain
CDDcd000188.49E-192481No hitNo description
PROSITE profilePS5103224.0652481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-332482IPR001471AP2/ERF domain
PRINTSPR003674.3E-112536IPR001471AP2/ERF domain
PRINTSPR003674.3E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAMKEKSKDV KPSTGKANAV KEVHFRGVRK RPWGRYAAEI RDPSKKSRVW LGTFDTAEEA  60
ARAYDAAARE FRGPKAKTNF PSPSEIQSPS NSSTVESSSG DGSTHAPVEL DLTRRLGVAA  120
GGGGAGSEIP ILHHPQAMAV LPNGQPVVFF QPMALNRADY PYRFGPVAMD YANVVGRGRG  180
AVHSDSDSSS VVDDNISDGD NMKRGGGLDL DLNFPPPVEA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-212481563ATERF1
3gcc_A8e-212481563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7435460.0KF743546.1 Coffea arabica ERF transcription factor 07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063385.11e-160ethylene-responsive transcription factor 4-like
SwissprotQ9LW495e-70ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A068V7H91e-159A0A068V7H9_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000689592e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-22erf domain protein 9