|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc05_g05360 |
Common Name | GSCOC_T00035104001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
GRAS |
Protein Properties |
Length: 449aa MW: 50242.2 Da PI: 4.7597 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc05_g05360 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 288.6 | 1.7e-88 | 45 | 441 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshl 96
++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r++r +++ ++ ++s+++ + +++++l ++++ P+++f++
Cc05_g05360 45 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLKALISRVSRVCPTPMNLNgNSSPQR-----RLMTVTELagYVDLIPWHRFGFC 137
689***************************************************8877776552333333.....22223333449************ PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......... 181
+ N+aI +a++g ++vHi+D++i++++QWp+L+++La+Rpegpps+Ri + + ++ + + ee+g+rL +fA+ +vpfefnv+
Cc05_g05360 138 ASNSAIFKAIQGYNKVHILDLSITHCMQWPTLIDTLAKRPEGPPSVRISVPSWRPPVpplLNVSSEEVGQRLGNFAKFKDVPFEFNVIgeqptvpssp 235
*************************************************988866668899999****************************999888 PP
GRAS 182 ......vakrledl............eleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
++++L+++ +Eal++n++ l +l+de+ + +s +rd +L+ +k+l+P +++vv+++++++ +++ r+
Cc05_g05360 236 cistleC------SslqydfllnqvlNPSTLKLEDDEALVINCQNWLRYLPDEQNNGASqeisCRDIFLNRIKDLNPCIITVVDEDSELDVSNLTSRI 327
5544430......2223334455555888889999****************9988766656779********************************** PP
GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
+ +++y + fd+le+ l++++++ri +E+ +g +i+n++a eg++r+er e+ k ++r+++ GF +vp+ e++ +++k ll +++ g+ +++e+
Cc05_g05360 328 TTCFNYLWIPFDALETFLSKDNSQRIEYEAD-IGHKIENIIAFEGTQRIERLESGTKFSQRMRNNGFFSVPFCEETISEVKFLLDEHA-SGWGMKKED 423
*******************************.********************************************************.8999***** PP
GRAS 356 gslvlgWkdrpLvsvSaW 373
+ lvl+Wk+++ v ++aW
Cc05_g05360 424 DMLVLTWKGHNSVYATAW 441
****************** PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MKTELRGNNT PISLQNPNLF DSPQSSILSG ALKGCLGSLD GACIEKLLLH CASALESNDV 60 TLAQQVMWVL NNVASPVGDP NQRLTSWFLK ALISRVSRVC PTPMNLNGNS SPQRRLMTVT 120 ELAGYVDLIP WHRFGFCASN SAIFKAIQGY NKVHILDLSI THCMQWPTLI DTLAKRPEGP 180 PSVRISVPSW RPPVPPLLNV SSEEVGQRLG NFAKFKDVPF EFNVIGEQPT VPSSPCISTL 240 ECSSLQYDFL LNQVLNPSTL KLEDDEALVI NCQNWLRYLP DEQNNGASQE ISCRDIFLNR 300 IKDLNPCIIT VVDEDSELDV SNLTSRITTC FNYLWIPFDA LETFLSKDNS QRIEYEADIG 360 HKIENIIAFE GTQRIERLES GTKFSQRMRN NGFFSVPFCE ETISEVKFLL DEHASGWGMK 420 KEDDMLVLTW KGHNSVYATA WVPCGFDD*
|