PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g14020
Common NameGSCOC_T00031783001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 411aa    MW: 44706.5 Da    PI: 9.2624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g14020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C+k F r  nL+ H r H
  Cc03_g14020  6 YICEVCHKGFQRDQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H213.40.0002382104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H + +
  Cc03_g14020  82 WKCDKCSKRYAVQSDWKAHTKIC 104
                  58*****************9987 PP
3zf-C2H211.30.0011112130523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg+ Fsrk+++++H   +
  Cc03_g14020 112 DCGTIFSRKDSFVTHRAFC 130
                  8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-6528No hitNo description
SMARTSM003550.038628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552104777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRPTT QVKKRVYVCP EPSCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK  120
DSFVTHRAFC DALIEENNKM NQTLAAATGG MLQHQAQELF PSPLPVPDPT NPMMNLSISH  180
ANMDTSVLKP LSLNAQGLLA VSSNVDPIFS PNGANPRTSF STLGGHNGNS HLPIGSAFSS  240
ATALLQKAAE MGAKISDNSM APILLRGFSG YSTSSMNTSN SIQEGSSAVG GQTSGGVPNS  300
LYMRNLDAYG KSTEAGIQRI NSFSASQSGG LYDPNTLLMH SSNGTSGILS DRDHVLMGGS  360
ERLTLDFLGV EPAAAAAQSS FAKKRRLEGD VMGLDYSKAQ QNLHHLHSDW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3478141366Zinc finger protein JACKDAW
5b3h_F5e-3478141366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027166639.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A068URH10.0A0A068URH1_COFCA; Uncharacterized protein
STRINGEOX995611e-175(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1590056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-93indeterminate(ID)-domain 2