PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g29570 | ||||||||
Common Name | GSCOC_T00018394001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 293aa MW: 33501.6 Da PI: 6.1852 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 304 | 3.5e-93 | 1 | 287 | 106 | 373 |
GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203 +ege+ vHiiD+ +++QW++Ll++L +R+egpp+lRiTg+++ +ke l +++ rL++ Ae+l++pf+f + ++++le+l++e+Lrvk+gEa+a Cc02_g29570 1 MEGEKVVHIIDLHCFEPAQWINLLEELKARQEGPPHLRITGIHE----QKEVLDQMAVRLQEAAEKLDIPFQFCP-MVSKLENLDIESLRVKSGEAVA 93 799*****************************************....9**************************.799******************* PP GRAS 204 Vnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++vlqlh+ll d++ s + ++ ++L+++++lsPk++vv+e+e++hn + ++er+ eal++y+alfd+le++lpr Cc02_g29570 94 ISSVLQLHSLLaydddtmrrnspsrdvmslygaspDSQSSPPPKTLSFLNALWGLSPKLMVVTEHESNHNCHGLMERVDEALKFYAALFDCLENTLPR 191 ********************************88755555555799**************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + er+k+E++l+g+ei++++aceg er++rhe+l kW rle aGF++++ls++ +kqa ++l+ ++ dg++++eesg ++++W+d pL+svSaW Cc02_g29570 192 APVERQKIEKFLFGEEIKSIIACEGLERKARHEKLDKWIPRLEFAGFGKINLSYNGMKQAMRVLQSCNYDGFKIKEESGYFIICWHDYPLFSVSAW 287 ************************************************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.52 | 1 | 268 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-90 | 1 | 287 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEGEKVVHII DLHCFEPAQW INLLEELKAR QEGPPHLRIT GIHEQKEVLD QMAVRLQEAA 60 EKLDIPFQFC PMVSKLENLD IESLRVKSGE AVAISSVLQL HSLLAYDDDT MRRNSPSRDV 120 MSLYGASPDS QSSPPPKTLS FLNALWGLSP KLMVVTEHES NHNCHGLMER VDEALKFYAA 180 LFDCLENTLP RAPVERQKIE KFLFGEEIKS IIACEGLERK ARHEKLDKWI PRLEFAGFGK 240 INLSYNGMKQ AMRVLQSCNY DGFKIKEESG YFIICWHDYP LFSVSAWGFK RY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-41 | 1 | 287 | 124 | 378 | Protein SCARECROW |
5b3h_A | 3e-41 | 1 | 287 | 123 | 377 | Protein SCARECROW |
5b3h_D | 3e-41 | 1 | 287 | 123 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027103016.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_027103018.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_027122018.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_027158097.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 1e-122 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A068V712 | 0.0 | A0A068V712_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_023504m | 1e-149 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16041 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-124 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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