PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g21520
Common NameGSCOC_T00014795001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CAMTA
Protein Properties Length: 1063aa    MW: 118396 Da    PI: 6.172
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g21520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1182.54.9e-57201363118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwl++ ei++iL n++k+ +t e++ +p sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+een++fqrr+y
  Cc02_g21520  20 SEaQHRWLRPAEICEILRNYQKFYITPEPPVKPASGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCYYAHGEENENFQRRSY 117
                  4449********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  w+Le++l +iv+vhylevk
  Cc02_g21520 118 WMLEQDLMHIVFVHYLEVK 136
                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.27815141IPR005559CG-1 DNA-binding domain
SMARTSM010764.2E-8118136IPR005559CG-1 DNA-binding domain
PfamPF038597.3E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-7474562IPR013783Immunoglobulin-like fold
PfamPF018331.4E-7475561IPR002909IPT domain
SuperFamilySSF812962.8E-18476562IPR014756Immunoglobulin E-set
PROSITE profilePS5029718.298659770IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.84E-18664771IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-17667793IPR020683Ankyrin repeat-containing domain
CDDcd002041.47E-14674768No hitNo description
PfamPF127962.2E-7681771IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.938709741IPR002110Ankyrin repeat
SMARTSM002480.0012709738IPR002110Ankyrin repeat
SMARTSM00248370748777IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-8882935IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.57884906IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.913885914IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034888905IPR000048IQ motif, EF-hand binding site
SMARTSM000150.003907929IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578908932IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4910929IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MAGSGSQNLG FRLDIKQILS EAQHRWLRPA EICEILRNYQ KFYITPEPPV KPASGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NIQCLKDAGT VSSNSQDDSS LSFGSPANSD RLASPYTDMT  180
SPTSTLTSAC EDAESEINHP ASSTFHPYLD TTQEDFRGLE NLDAGFSSSY NVLQSLGSQP  240
TSSASVHDGR TVDHPESNFV PGVERTLDSA SWEEVLGQCT TGMVGGGQKS WNPPAHQANW  300
QGDCLSPMQG VPLGQNLIPD SAYYGKGSLW EQKSLSALLQ SAADPFYMRP DGQEDEAVER  360
DVQKLRQNVE AGYMMSYKAE NGMPSAGSGN CSLVLKQPHL SGIQAEESLK KVDSFSRWMA  420
KELGEVEELP LQSTNGYSWS VIQTEDVVGD SCTPTQLQLD ADTLNFSLSH EHLFSITDFS  480
PNWAYSRLET KVLITGRFLK SGQEFTRYKW SCMFGELEVP AEVLSEGVLC CHAPPHKAGL  540
VPFYVTCSNR LACSEVREFE YRAGPSQEID FADIPGSDAI EMHLQRRLEK LFLTGPIGST  600
QSVSETITDK NVVVNKIFLL MEAEYNQMAT LSPRDVSPPK GIEEQHGEKL LKEKFYTWLI  660
QKVTEGGKGP SLLDDEGQGV LHLAAALGFN WAIKPVIISG ISIDFRDVNG WTALHWAALC  720
GREDTVAVLV SLGAAPGALT DPSAEHPLGR TPADLASANG HKGIAGFLAE CSLTTHLSRL  780
TVKDSKDDDT LQYSEAKAIK TVSERVASPI TEQDVPDSLS LKDSMAAVSN ATQAAARIHQ  840
IFRIQSFQRK QLDIQHINES SSMDEHTLSL IAAKTSRLGK NDWTAHGAAI SIQKKFRGWK  900
KRKEFLIIRQ RIVKIQAHVR GHQVRKKYKT IIWSVGILEK VILRWRRKGS GLRGFRPDAV  960
AKCPSAENMP RKDDDYDFLQ EGRKQTEERL QKALSRVKSM AQYPEARAQY RRLLTVAEGF  1020
RETEDTSNPT LSGSEDVSYA DEELFDVEKL SDHDTFMSMA FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A1e-14476566993calmodulin binding transcription activator 1
2cxk_B1e-14476566993calmodulin binding transcription activator 1
2cxk_C1e-14476566993calmodulin binding transcription activator 1
2cxk_D1e-14476566993calmodulin binding transcription activator 1
2cxk_E1e-14476566993calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106275.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A068TQ040.0A0A068TQ04_COFCA; Uncharacterized protein
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]