PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g05970
Common NameGSCOC_T00039118001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 356aa    MW: 38918.9 Da    PI: 4.3247
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g05970genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-2080130155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p   + r  r +lg+fgta eAa a+++a+++++g
  Cc02_g05970  80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAVEAALAYDEAARSMYG 130
                  56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-1480130IPR001471AP2/ERF domain
CDDcd000188.82E-3180139No hitNo description
Gene3DG3DSA:3.30.730.104.2E-3081139IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2081138IPR016177DNA-binding domain
SMARTSM003801.8E-3581144IPR001471AP2/ERF domain
PROSITE profilePS5103220.86381138IPR001471AP2/ERF domain
PRINTSPR003671.2E-98293IPR001471AP2/ERF domain
PRINTSPR003671.2E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MALLDQVSSV ASVPMDYSRK RKSRRRDGTN NVADTLAKWK EYNDKLDSLD EEGKVVRKVP  60
AKGSKKGCMK GKGGPENARC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FGTAVEAALA  120
YDEAARSMYG PCARLNLPNY GPQQEASIES SSFPATSASD STTTSGLSEV CPPADRDAEP  180
NSNVKEEDGE GESRIQDTRP LTWVGAGSPM CTVKEEPKDG HMEALDMSIQ AEAPVKNETF  240
NSSDEPLDTL AWDEMFDIDE MLSTLNSGPT HGSGSQYELV GINGGQFLNG NMQPSEFLYQ  300
MQNPDAKVLG SCQNMEQTSQ GVDYGFDFLE PGREENSQFA LDDLGFFDLD ADLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1781138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
21826RKRKSRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104260.10.0dehydration-responsive element-binding protein 2C-like
RefseqXP_027110725.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLA0A068UZW40.0A0A068UZW4_COFCA; Uncharacterized protein
STRINGXP_009764492.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.19e-41ERF family protein