PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g01010 | ||||||||
Common Name | GSCOC_T00019909001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 21452.7 Da PI: 5.4146 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.2 | 3.3e-14 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+++ ++ + + +LAk lgL+ rqV++WFqN+Ra++k Cc02_g01010 1 MFNREAKLEPRNKMQLAKDLGLQPRQVSIWFQNKRARWK 39 69999*********************************9 PP | |||||||
2 | HD-ZIP_I/II | 98.1 | 8.3e-32 | 1 | 77 | 17 | 93 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +F++e kLep++K++la++Lglqprqv +WFqn+RAR+k+k+lE++y++Lk+++dal ++ e+L+ke+e+L e+l++ Cc02_g01010 1 MFNREAKLEPRNKMQLAKDLGLQPRQVSIWFQNKRARWKSKKLEQEYRVLKANFDALCHQFEALKKENESLLEQLHT 77 699999******************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.09 | 1 | 41 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0045 | 1 | 45 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-11 | 1 | 39 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-15 | 2 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-12 | 2 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.14E-10 | 2 | 42 | No hit | No description |
PRINTS | PR00031 | 8.0E-6 | 12 | 21 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 16 | 39 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 21 | 37 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-13 | 41 | 82 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MFNREAKLEP RNKMQLAKDL GLQPRQVSIW FQNKRARWKS KKLEQEYRVL KANFDALCHQ 60 FEALKKENES LLEQLHTLNG LLENSNKRQS SSKDSNENAE HTAPPKRDEH RERREDDERT 120 TKVNVDGVGV DEHFGKEDQA DFDILTEQGE SSSASRKPWC NLVSDGLLDE SCCPSSWWDF 180 SDGLC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027109984.1 | 1e-131 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A068U9M6 | 1e-134 | A0A068U9M6_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-31 | homeobox 7 |