PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g15330 | ||||||||
Common Name | GSCOC_T00016576001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 842aa MW: 92081.3 Da PI: 6.7962 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.7e-19 | 314 | 413 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++lv+ Cc01_g15330 314 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGQLVM 409 99**************************666667778***************9989999999***9.********************887.6666666 PP EEE- CS B3 95 kvfr 98 ++++ Cc01_g15330 410 GFRK 413 6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-29 | 310 | 417 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.4E-21 | 312 | 416 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.76E-24 | 312 | 413 | No hit | No description |
SMART | SM01019 | 2.0E-22 | 314 | 414 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-16 | 314 | 413 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.335 | 314 | 415 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.518 | 544 | 593 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 9.3E-10 | 549 | 590 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MGSKICMNEV CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC 60 KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF 120 DSLLQLCNNV DVNGSKKMFK PHKVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS 180 MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ 240 QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ 300 QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE 360 WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET 420 QDPQPSGLPN GGSPGETSYL GASDNMLAIS ENGNNGGQIH EDSSQRNILI PEKKKARNIG 480 LKNKRLLMHS DDAMELRVTW EEAQELLRPP TNSPTIIKIE DCEFEEYDEP PIFGKRTIFT 540 VQPSGQQEQW AQCDNCSKWR RLPMHVLVPA RWTCPDNAWV LNSTCSAPDD INPRELEALN 600 IASKDFKRRR IVETKVAEDY EPSGLDALAT AAVLGDNMGD LTEMSVGATT KHPRHRPGCS 660 CIVCIQPPSG KGKHPPSCKC NVCLTVKRRF KTLMMRKKKR QSDREAELLQ GKDQETPPLD 720 MSEMEGAAEQ ALLLTNHSDA ERSQNGSLME AGESNKGQLD LNCHPSREED MLAEAAAGIN 780 LATLIDAASI PLDVYMRQDG VASLSHHLLP SHAPGDGEGS LPEEGCSASA NMGPEKKGKE 840 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-68 | 292 | 421 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 606 | 610 | KRRRI |
2 | 686 | 697 | KRRFKTLMMRKK |
3 | 686 | 699 | KRRFKTLMMRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027112477.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like isoform X2 | ||||
Refseq | XP_027112486.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like isoform X3 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A068U8U9 | 0.0 | A0A068U8U9_COFCA; Uncharacterized protein | ||||
STRING | XP_009772834.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |