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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g07010 | ||||||||
Common Name | GSCOC_T00030116001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 530aa MW: 59541.4 Da PI: 5.9656 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 26 | 1.1e-08 | 214 | 268 | 1 | 55 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lv+ Ll +Ae+v ++++ la+ l++r +as +g++ qR++++f+eAL++r+ Cc01_g07010 214 LVQFLLIAAECVGHKKFDLASGLITRCLCIASDSGNAAQRIVFHFAEALQHRIDI 268 57899***********************************************975 PP | |||||||
2 | GRAS | 214.3 | 6.3e-66 | 279 | 527 | 119 | 374 |
GRAS 119 isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216 i+ G+QW L+qaL +R+ + p l iT+vg +k+++eetg+rL +fA++l+++++fnv++++++e+l+ ++L+ p+Ea+aV + l l ++ ++ Cc01_g07010 279 IERGVQWTVLMQALVERD-DRPALTITAVGT---MNKQRMEETGKRLISFAQSLNLSLSFNVVMVSDMEELKEDMLSKAPDEAVAVYSPLILRTMISK 372 789**************5.569*********...67************************************************************99 PP GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 + sl++ v+k++++++P vvvv+e ea+hns+ F rf+e+l +ysa+fd+le + r++e+r+++E +lg+ i+n+v eg++r r+ Cc01_g07010 373 PESLRN----VIKVIRRMKPAVVVVTEVEANHNSPLFISRFTESLFFYSAFFDCLEDCMERNNEHRKTIEGIYLGEGIRNMVGSEGDKRCTRNVMIDV 466 999999....**************************************************************************************** PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 Wre +++ G+ +v+ls++ +qa+++l+k++ ++ + + +v+gWk+ p+ s++ W+ Cc01_g07010 467 WREFFTRYGMVEVELSHSSLQQANMILKKFHkASSCNLINAGKGIVIGWKGTPIHSLTTWK 527 *******************************88889999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.8E-6 | 214 | 268 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 27.386 | 279 | 506 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-63 | 279 | 527 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MEDYEADEQE ANGGKTQRQP PQPPDTDWFN VEDNSLYGLY QQQNNPTPSK VAFLEGGQQA 60 TSTPPQFNWV QNDFQHLVST PALHSFQPIY DQATAKNNEQ PQQQLLPETG GKWQQLKGKT 120 HSFTLASLEL LSNYGKGFKN AAREDQNWSN DSPTNIDQDS SQGRRLSLGE IIRAAGERYI 180 QFSTKNVDGF SGLIHPYASA ITDISVAETA DVELVQFLLI AAECVGHKKF DLASGLITRC 240 LCIASDSGNA AQRIVFHFAE ALQHRIDIQT GKITPERIIE RGVQWTVLMQ ALVERDDRPA 300 LTITAVGTMN KQRMEETGKR LISFAQSLNL SLSFNVVMVS DMEELKEDML SKAPDEAVAV 360 YSPLILRTMI SKPESLRNVI KVIRRMKPAV VVVTEVEANH NSPLFISRFT ESLFFYSAFF 420 DCLEDCMERN NEHRKTIEGI YLGEGIRNMV GSEGDKRCTR NVMIDVWREF FTRYGMVEVE 480 LSHSSLQQAN MILKKFHKAS SCNLINAGKG IVIGWKGTPI HSLTTWKFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-26 | 232 | 527 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027172080.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A068UMG5 | 0.0 | A0A068UMG5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018792 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-44 | GRAS family protein |