PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g25540
Common NameGSCOC_T00008672001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 570aa    MW: 63131.9 Da    PI: 5.3089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g25540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.4e-08451499348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
      Cc00_g25540 451 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 499
                      8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.853444503IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-13446503IPR009057Homeodomain-like
SuperFamilySSF466897.8E-16446507IPR009057Homeodomain-like
SMARTSM007171.1E-8448501IPR001005SANT/Myb domain
CDDcd116603.81E-18450500No hitNo description
PfamPF002491.1E-6451499IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
METVVSMEVN EEAKVEDGIA KETGSEPVSL KHISDPDPDP EPDPVVYKLV RVDGEGRLVP  60
ATDEEVLVVE DLLEDEKPEH CAAECEQPIE CIKTEGCSLQ KNHVQSSEGI SSVQLDAAVD  120
LGKKIIQPEE IPCQMASASA GNSISQPMSA VGCPGSEGGL VENWSSRTDL ATTGKPDFSK  180
LKGEICLDNL TVKELQETFR ATFGRETFVK DKRWLKRRIS MGLTNSCDFS TTAFMIKDNE  240
VLKKDKKENR KKSAVYKDLV VGVASETAGS PTNGLNRLAD SNPNFDDRKT ESLLLEHDSV  300
REDPSLEQRT AKRVRKPTKR YIEEMSEEES RGSSGRMLGW PGDLWENFMP FMPSGIGLAT  360
RTVRRALGEP GPAPQDEMQN EVLKSSLSPG WNQQPIAAAS ENDNHHLERK EVELEKYVEL  420
KRMDSFEDNS DDNMGSVPAS SGGMRRKHHR PWSLTEVVKL VEGVARYGAG RWSEIKRLAF  480
ASYSYRTSVD LKDKWRNLLR ASFSQLPAEK GMHNARKHAS IPIPAPILLR VRELAEMQAQ  540
VPANFSSSKF TGQSGGSDRS VHETRSGYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125611.10.0uncharacterized protein LOC113742105 isoform X1
RefseqXP_027125612.10.0uncharacterized protein LOC113742105 isoform X1
RefseqXP_027125613.10.0uncharacterized protein LOC113742105 isoform X1
TrEMBLA0A068VKU60.0A0A068VKU6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000063421e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-40TRF-like 6