 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc00_g08580 |
| Common Name | GSCOC_T00005646001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
GRAS |
| Protein Properties |
Length: 344aa MW: 38798.3 Da PI: 6.0521 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc00_g08580 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 231.7 | 3.4e-71 | 22 | 292 | 1 | 280 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l++ Ll A v+++d e a L+ l +++ +gd++qR+aayf+ +L arl+ s y+ + ++t+ +ee+ a++ f++vsP+++f+h+ta
Cc00_g08580 22 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAHFTA 115
57899999***********************************************9*****999988887....688889999*************** PP
GRAS 99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlvakrled 188
Nq I e +e+e + +H+iDfdis+G+QWp+L+q+L++ + ++ sl+iTg+g+ s eel+et+ rL +fA++++ ++fef+ l l
Cc00_g08580 116 NQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL----LRG 205
**********989885556*********************877657788*********....******************9559******8....455 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
l +Lr k+ E+++Vnlvl+l +l +vs +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+ lp +++
Cc00_g08580 206 SMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPVDTK 292
55699*****************9997..333...35589*********************************************99998765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MREQMFNQKK DGGVEDGKGL HLIHSLLISA SSVDENDIES AVDNLCDLYQ NVCLSGDSLQ 60
RVAAYFADGL VARLLTRKSP FYDMIMKTPT PEEEFLAFTE FYKVSPFYQF AHFTANQSII 120
ETFEKEEPNN SRVLHVIDFD ISYGFQWPSL IQSLSEIATA NKRVSLKITG FGRSMEELQE 180
TETRLVSFAK SFRSLNFEFQ GLLRGSMLGS LRRKKSETVV VNLVLHLNTL NNVSKISETL 240
KCVNLINPSI VVMVEHEGSR TPQNFLSRFM ESLHYFAAMF DSLDDCLPVD TKLLLKIRSH 300
CSPIQFDGGN GGFRIFEKAD GKAISLGWQD RCLITASAWH CVQ*
|
