PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g06820
Common NameGSCOC_T00007412001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 545aa    MW: 60850.3 Da    PI: 6.0339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g06820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.7e-1391745441374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ L++cA+av+++d+   q+l+++l++++s +g+p+qRl ay++e+L a+la s+s++yk+l+++e +   s e l+++++++ev+P++kf+++ a
  Cc00_g06820 174 LKQILIACAKAVADNDTLISQWLMSELRQMVSVSGEPIQRLGAYMLEGLVAKLAASGSSIYKSLRCKEPA---SFELLSYMHILYEVCPYFKFGYMSA 268
                  5789*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+++Ae+++vpfef++ +a +  ++++e+L
  Cc00_g06820 269 NGAIAEAMKDENRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLSIVGQRLSRLAESFKVPFEFHA-AAMSGCEVQPEDL 365
                  ***************************************************998899999************************.89999******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++pgEalaVn+++ lh+++desvs+e++rd++L+lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++eri+vE+++l+r
  Cc00_g06820 366 GIQPGEALAVNFAFVLHHMPDESVSTENPRDRLLRLVKSLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRDHKERINVEQHCLAR 463
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vnv+aceg er+erhe l+kW++r+++aGF+p+pl + +++++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Cc00_g06820 464 DVVNVIACEGPERVERHEVLGKWKSRFRMAGFSPYPLCSLVNATIKKLLENYSDK-YRLEERDGALYLGWMNRDLVASCAWK 544
                  *****************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.271148525IPR005202Transcription factor GRAS
PfamPF035143.0E-136174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQASQRPRKV GMPNTFFLNQ PLQKVESYFL PHIQTFEPQL SCNNSRYGPS CPIQISHDRY  60
CTLESSSLTG NHTIYNSPST VSFSPIGSPV SQQESLHMTD PVQSPETNYG SPLSGSCITN  120
DVNDLRHKLR ELENAMLGPD SDFFGACDNL LPINEGALEN SWRQMIEVIP RGDLKQILIA  180
CAKAVADNDT LISQWLMSEL RQMVSVSGEP IQRLGAYMLE GLVAKLAASG SSIYKSLRCK  240
EPASFELLSY MHILYEVCPY FKFGYMSANG AIAEAMKDEN RVHIIDFQIS QGSQWVTLIQ  300
AFAARPGGPP HIRITGIDDS TSAYARGGGL SIVGQRLSRL AESFKVPFEF HAAAMSGCEV  360
QPEDLGIQPG EALAVNFAFV LHHMPDESVS TENPRDRLLR LVKSLNPKVV TLVEQESNTN  420
TAAFFPRFLE TLDYYTAMFE SIDVTLPRDH KERINVEQHC LARDVVNVIA CEGPERVERH  480
EVLGKWKSRF RMAGFSPYPL CSLVNATIKK LLENYSDKYR LEERDGALYL GWMNRDLVAS  540
CAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-621765446375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061587.10.0scarecrow-like transcription factor PAT1
RefseqXP_027061588.10.0scarecrow-like transcription factor PAT1
RefseqXP_027061589.10.0scarecrow-like transcription factor PAT1
RefseqXP_027061590.10.0scarecrow-like transcription factor PAT1
RefseqXP_027064389.10.0scarecrow-like transcription factor PAT1
RefseqXP_027064390.10.0scarecrow-like transcription factor PAT1
RefseqXP_027064391.10.0scarecrow-like transcription factor PAT1
RefseqXP_027064392.10.0scarecrow-like transcription factor PAT1
RefseqXP_027170795.10.0scarecrow-like transcription factor PAT1
RefseqXP_027170796.10.0scarecrow-like transcription factor PAT1
RefseqXP_027170797.10.0scarecrow-like transcription factor PAT1
RefseqXP_027170798.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A068VEA10.0A0A068VEA1_COFCA; Uncharacterized protein
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]