PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028131m
Common NameCARUB_v10028131mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 386aa    MW: 44207.6 Da    PI: 9.2639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028131mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.21.3e-35441951128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                      lp+G++F+Ptd+el+ e+L++kv+gk+        +           +i+   +i++++P++Lp  v+++  + +fF+k +++y+tg+rk+r+ 
  Carubv10028131m  44 LPAGVKFDPTDQELI-EHLEAKVKGKDenekwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTKNGLSKHFFHKPSRAYTTGTRKRRKi 132
                      799************.99********9666655551...055554333555545**********.455556789******************88 PP

              NAM  78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                  ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Carubv10028131m 133 iqtdhdseltgSSETRWHKTGKTRPVMI-SGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 195
                      9999999997766889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3736214IPR003441NAC domain
PROSITE profilePS5100531.17344214IPR003441NAC domain
PfamPF023659.2E-1645195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MKNSYKCNLI DSKLEEHHHL CGSKHCPGCG RMIQAATNPN WVGLPAGVKF DPTDQELIEH  60
LEAKVKGKDE NEKWSSSHPL IDEFIPTIDG EDGICYTHPQ KLPGVTKNGL SKHFFHKPSR  120
AYTTGTRKRR KIIQTDHDSE LTGSSETRWH KTGKTRPVMI SGQQRGCKKI LVLYTNFGKN  180
RRPEKTNWVM HQYHLGISEE EREGELVVSK IFYQTQPRQC VSNLNWSDHH HGSKDVATAL  240
QTLGSGDVVS RVRTNPYTRG FEEGTAEASK GSENQRVSGT CEEVHDGIIR SSTSSSNQHH  300
HMIHDHNQHH QNVREFHISS YPMTPTTITS QHESIFNVTS TMPFQRSVVW FGIRRPNYGL  360
YHSYLHRRLL WLYYIRSNIL HKTKD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028131m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133921e-150AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026881e-150CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635819.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_023635822.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F81e-113NAC75_ARATH; NAC domain-containing protein 75
TrEMBLR0EZR90.0R0EZR9_9BRAS; Uncharacterized protein
STRINGXP_006281924.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]