PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027180m | ||||||||
Common Name | CARUB_v10027180mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 22970.8 Da PI: 4.6347 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.2 | 7.1e-32 | 17 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF+P de+lv eyL+kkv ++++++ ++e++ ++v+PwdL +++ke+y+F+k+++++ rk r t sgyW++ + +ev++ Carubv10027180m 17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVME 100 79*************************999..49*************6...56789*******99875....899********98866.67777 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g+l g +kt++fy g++p+g+ t W+m e+rl Carubv10027180m 101 AgdreCGHLEGRRKTFAFYIGKKPRGTITPWIMYEFRL 138 6466666679**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-34 | 7 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.586 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-19 | 18 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD 60 LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME AGDRECGHLE GRRKTFAFYI 120 GKKPRGTITP WIMYEFRLLS SRATRWSSSL LPRGDLGKWR AVKVVVKEEN EEEMMVEDEH 180 ESDESDGEEV IQSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-19 | 15 | 139 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-19 | 15 | 139 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-19 | 15 | 139 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-19 | 15 | 139 | 15 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swm_B | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swm_C | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swm_D | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swp_A | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swp_B | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swp_C | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
3swp_D | 6e-19 | 15 | 139 | 18 | 146 | NAC domain-containing protein 19 |
4dul_A | 6e-19 | 15 | 139 | 15 | 143 | NAC domain-containing protein 19 |
4dul_B | 6e-19 | 15 | 139 | 15 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027180m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT015150 | 0.0 | BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281147.1 | 1e-141 | NAC domain-containing protein 41 | ||||
TrEMBL | R0GNX9 | 1e-139 | R0GNX9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281147.1 | 1e-140 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14666 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50820.1 | 1e-95 | NAC domain containing protein 97 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027180m |
Entrez Gene | 17874767 |