PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026677m
Common NameCARUB_v10026677mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 356aa    MW: 39163 Da    PI: 10.2694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026677mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.2e-1298142147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Carubv10026677m  98 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 142
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.65E-1692148IPR009057Homeodomain-like
PROSITE profilePS5129413.75893147IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-696148IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1896145IPR006447Myb domain, plants
SMARTSM007179.6E-1097145IPR001005SANT/Myb domain
PfamPF002497.2E-1098142IPR001005SANT/Myb domain
CDDcd001671.66E-7100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
EQQQQKKKKR ANPQKILLRF LYFMVSRNPN PSDGYFLDPT GMTVPGLGPS FTAAVSSSSS  60
PTTSSTAVAV ADATATVSSS SEDLSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW  120
KKIEAFIGSK TVIQIRSHAQ KYFLKVQKSG TGEHLPPPRP KRKAAHPYPQ KAHKNVQLQV  180
PGSFKSTSEP NDPSFMFRPE SSSMLMTSPT TAAAAPWTNN AQTISFTPLA KAGTGANNNS  240
SSSSENTPRP RSNRDTSDQG NAGHSLRVLP DFAQVYSFIG SVFDPYASNH LQKLKKMDPI  300
DVETVLLLMR NLSINLSSPD FEDHRRLLSS YDISSERATG GVNKTLNKDP PEIST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026677m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503030.0AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds.
GenBankBT0020020.0BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds.
GenBankBT0258820.0BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280712.20.0protein REVEILLE 6 isoform X2
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLR0GMQ90.0R0GMQ9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006280712.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-162MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]