PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10025656m | ||||||||
Common Name | CARUB_v10025656mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 19631.2 Da PI: 8.2004 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.8e-19 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y Carubv10025656m 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56778**********************************9996665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.006 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-26 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 DLDSVVERFM RDDDESDSGD EEGRARNGPK LKKMSERLDS LNQEIEAEKK RGEKDQEKLE 120 SAGDERFKKP IEALTLDELN EYKDKLKTVH GRIEGDAYRV HASSCLLSLS VKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-17 | 1 | 78 | 1 | 78 | MEF2C |
5f28_B | 5e-17 | 1 | 78 | 1 | 78 | MEF2C |
5f28_C | 5e-17 | 1 | 78 | 1 | 78 | MEF2C |
5f28_D | 5e-17 | 1 | 78 | 1 | 78 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10025656m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004077 | 1e-151 | AC004077.3 Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence. | |||
GenBank | AC004481 | 1e-151 | AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence. | |||
GenBank | CP002685 | 1e-151 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ446598 | 1e-151 | DQ446598.1 Arabidopsis thaliana clone pENTR221-At2g34440 MADS-box family protein (At2g34440) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296471.1 | 1e-124 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 6e-99 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | R0HI38 | 1e-122 | R0HI38_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296471.1 | 1e-123 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-94 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10025656m |
Entrez Gene | 17888879 |
Publications ? help Back to Top | |||
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