PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10025028m | ||||||||
Common Name | CARUB_v10025028mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 318aa MW: 35830.1 Da PI: 6.7068 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.9 | 7.3e-34 | 71 | 167 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 lf r+w+eeDe+v+L+Gl+d++aktg +++ d+dafy+f+ si +k+ k+q+++Kir+LK +f + +++++g++p+f++++d+++f++s+++ Carubv10025028m 71 LFTRIWNEEDELVVLKGLVDYRAKTGFQSKIDWDAFYRFLAVSIVSKYAKDQVLSKIRKLKSRFLVHLERINQGSDPKFTRASDSEAFGFSMML 164 699******************************************************************************************* PP DUF573 96 Wgs 98 Wg+ Carubv10025028m 165 WGQ 167 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-24 | 72 | 166 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MVSPKHLEFS SSGGADDSDD TFSRQKSPVS PHSSKRAASV AEEETKQKKK HKMKKKIKKK 60 TTTTTQLGSP LFTRIWNEED ELVVLKGLVD YRAKTGFQSK IDWDAFYRFL AVSIVSKYAK 120 DQVLSKIRKL KSRFLVHLER INQGSDPKFT RASDSEAFGF SMMLWGQNEA NDDGMDKEQE 180 EPLNENGAPD NNGAARVEQQ RENGEEMLKE NEEVANTEPL NENGAVKVKE NGTADGKESH 240 DGDGDDELYA VRDAFETVMS QGLSDYQKKL QLKKLMNIGN GKRRELSDEW KALCVEERRL 300 NIKKLRFSAK LAEAANE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10025028m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295898.1 | 0.0 | GLABROUS1 enhancer-binding protein | ||||
Swissprot | Q9ASZ1 | 1e-128 | STKLO_ARATH; GLABROUS1 enhancer-binding protein | ||||
TrEMBL | R0G0S3 | 0.0 | R0G0S3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295898.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 1e-122 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Carubv10025028m |
Entrez Gene | 17889003 |
Publications ? help Back to Top | |||
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