PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023178m
Common NameCARUB_v10023178mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family VOZ
Protein Properties Length: 457aa    MW: 51131.9 Da    PI: 4.9627
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023178mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ424.81.3e-1302264402216
              VOZ   2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 
                      ppsaflgpkcalwdctrpaqgsew+ dycs++hatlalne++pgt+pvlrp+gi+lkd+ll++al+ k+qgk+vgip+cega+++k+pwnaael
  Carubv10023178m 226 PPSAFLGPKCALWDCTRPAQGSEWYVDYCSNYHATLALNEDSPGTAPVLRPGGISLKDNLLIEALRGKTQGKNVGIPVCEGAVNTKCPWNAAEL 319
                      7********************************************************************************************* PP

              VOZ  96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl 189
                      f+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+da+alyrlelk+
  Carubv10023178m 320 FHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKV 413
                      ********************************************************************************************** PP

              VOZ 190 vdekksakgkvskdsladlqkklgrlt 216
                       ++kks+kgk+skd+ladlqkk+g+++
  Carubv10023178m 414 GNGKKSPKGKISKDPLADLQKKMGQFK 440
                      ************************986 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSNNPKMTCV SSAHQNLEEK LRELQERFCH LQAARKEGRH GDLALLEAQI SQNLCEWQAE  60
LTAPSPESSL LGEGISQFLE EFAEFAPLLK LDEEDDATSS LKEHAAPKPE SEGFAQSLCP  120
PEWTSEHFSQ SPFNGNFSCG VEDAGNNTET HGQQLHYAYE GFDSSINTAP GFHDQKLSNL  180
DITSQYDYIC SEVRQELNNS PSIKLDSSEE IENFTEFTTP SSVRVPPSAF LGPKCALWDC  240
TRPAQGSEWY VDYCSNYHAT LALNEDSPGT APVLRPGGIS LKDNLLIEAL RGKTQGKNVG  300
IPVCEGAVNT KCPWNAAELF HLELVEGETI REWLFFDKPR RAYDSGNRKQ RSLPDYSGRG  360
WHESRKQLMK EQEGQKRSYY MDPQPPGPFE WHLFEYQINE SDACALYRLE LKVGNGKKSP  420
KGKISKDPLA DLQKKMGQFK VATDKPSPPT KGRTKE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00018PBMTransfer from AT2G42400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023178m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1252570.0AB125257.1 Arabidopsis thaliana AtVOZ2 mRNA for Transcription factor AtVOZ2, complete cds.
GenBankAF3618310.0AF361831.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.
GenBankAY0780480.0AY078048.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639827.10.0transcription factor VOZ2
SwissprotQ9SLB90.0VOZ2_ARATH; Transcription factor VOZ2
TrEMBLR0FVW10.0R0FVW1_9BRAS; Uncharacterized protein
STRINGXP_006294184.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110602534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42400.10.0vascular plant one zinc finger protein 2
Publications ? help Back to Top
  1. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  2. Koguchi M,Yamasaki K,Hirano T,Sato MH
    Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis.
    Plant Signal Behav, 2017. 12(3): p. e1295907
    [PMID:28277968]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]