PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10021430m

Common Name

CARUB_v10021430mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 193aa MW: 22237.4 Da PI: 5.3395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10021430m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	7.9e-10	82	125	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++E++RR+ i++++++L+++ P + +K++ a Le ++YIksLq Carubv10021430m 82 MMEKKRRQVIKDKIDTLQKMTPIP-----PKPDLAGKLENIIDYIKSLQ 125 79*******************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.44E-9	65	125	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-9	73	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.852	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-11	76	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-5	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-7	82	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEGNNHTEGT NEEELCSLPE MIYALCSKDR SDLNPLQEIF GAHTSSPMPK DVVTKNCDHD 60 EKLDEESNRM AKRQRSMDYR VMMEKKRRQV IKDKIDTLQK MTPIPPKPDL AGKLENIIDY 120 IKSLQYQADI MYRAYAATPV YSSPYYGTQP PPCMSPWGYY PPGIPMMPQQ NMPYIPQYDQ 180 VYDMAPRDQT KP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269\|PubMed:23874927, ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10021430m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301038.1	1e-141	transcription factor bHLH109
Swissprot	Q5XVH0	1e-80	BH109_ARATH; Transcription factor bHLH109
TrEMBL	R0GE80	1e-140	R0GE80_9BRAS; Uncharacterized protein
STRING	XP_006301038.1	1e-140	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	8e-76	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10021430m
Entrez Gene	17894096

Publications ? help Back to Top
Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS ONE, 2013. 8(7): p. e69261 [PMID:23874927] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]