PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10021349m

Common Name

CARUB_v10021349mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 233aa MW: 26184.8 Da PI: 8.3793

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10021349m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.7e-11	59	114	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ hn+ Er RR r+ ++ +L +llP +s+ ++kK s +i ++ YI +Lq Carubv10021349m 59 KKQDHNAKERLRRMRLHASYLTLGTLLPDhSSSSSKKKWSAPSIIDNVISYIPKLQ 114 6899***********************666777777*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-12	54	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.551	58	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-11	58	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	59	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-6	64	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSSHPNHQTS ISSLLHDRLH IPAETIIEKD SAEKDTCQSQ RKRKEPVLHE VDGSSGAAKK 60 QDHNAKERLR RMRLHASYLT LGTLLPDHSS SSSKKKWSAP SIIDNVISYI PKLQNEVGEL 120 TLRKQKLVEL ERRGPSIRAI SVLELGESGY EAVVQICLKK ENEDEFSNLL HVMEVQGLSI 180 LSASTSQVCR EQRVVCYNFH VKMEEKPCEG DDYITLLKNN IISSLRGNTK CK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10021349m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	1e-139	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	1e-139	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	1e-139	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300960.1	1e-171	transcription factor bHLH160 isoform X1
Swissprot	F4I8F9	1e-155	BH160_ARATH; Transcription factor bHLH160
TrEMBL	R0IB59	1e-170	R0IB59_9BRAS; Uncharacterized protein
STRING	XP_006300960.1	1e-170	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-156	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10021349m
Entrez Gene	17894991

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]