PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10021157m | ||||||||
Common Name | CARUB_v10021157mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 13955.9 Da PI: 10.0099 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.4e-07 | 33 | 77 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + +a + + ++ +W+ +a+ + g++ +++k+++ Carubv10021157m 33 SSWTFHQNKMFERALAIYDKDtpdRWHNVAKAVE-GKSVEEVKHHY 77 57********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.8E-6 | 31 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.85E-12 | 33 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-4 | 41 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
QLSSLTLSLF FLSFSFPSQV RKQMASNSTS STSSWTFHQN KMFERALAIY DKDTPDRWHN 60 VAKAVEGKSV EEVKHHYDIL VEDLINIESG RVPLPKYKTM ESKPRGTSDF DTRVMKKNLK 120 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-30 | 24 | 99 | 1 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10021157m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303004.2 | 8e-69 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 6e-53 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | R0GJ42 | 1e-84 | R0GJ42_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006303004.1 | 2e-85 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-48 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10021157m |
Entrez Gene | 17894472 |