PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018629m
Common NameCARUB_v10018629mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 356aa    MW: 39631.5 Da    PI: 10.4279
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018629mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66.1e-08268317147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG g+W+ + ++     ++Rt  ++k++w ++
  Carubv10018629m 268 RRPFTVSEVEALVQAVEKLGIGRWRDVKSHAFehaNHRTYVDLKDKWKTL 317
                      679***************************999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.57E-6120193IPR029071Ubiquitin-related domain
PROSITE profilePS500539.308126190IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.900.001127192No hitNo description
PROSITE profilePS5129415.007263322IPR017930Myb domain
SuperFamilySSF466899.72E-17265353IPR009057Homeodomain-like
SMARTSM007174.0E-8267320IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-11268318IPR009057Homeodomain-like
CDDcd116604.16E-18269319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVDCGVDAYQ LPLVPRAFRS PRGRRLRPMR KRRSVFEVSA QVAGHLSGEQ KNRVAICSLP  60
HETKETKDSF VVNNFLETME VEVKPQTGLE KPSKVSLSKD WLALGPSMSN SPITQEENFD  120
SSSKIVKLCI KSLKISELLV DVPESATVGS VKLAVLEAVT RIIKDGLNIK VLLRGKTIDD  180
DSKTLLQIGI PRDNNDDHNF SSLGFMLEPQ NSETTTNTTL TTVSARTRLR QNRVIGSVDS  240
NCSVAAKSVV PVRMKHASPP EMVQRRIRRP FTVSEVEALV QAVEKLGIGR WRDVKSHAFE  300
HANHRTYVDL KDKWKTLVHT AKISARQRRG EPVPQDLLDR VLAAHAFWSD RTGTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-4826135310102Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833MRKRRS
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018629m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638951.10.0LOW QUALITY PROTEIN: telomere repeat-binding protein 6
SwissprotQ9M3470.0TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLR0HN040.0R0HN04_9BRAS; Uncharacterized protein
STRINGXP_006292415.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.10.0TRF-like 4