PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017911m
Common NameCARUB_v10017911mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 249aa    MW: 28195.2 Da    PI: 10.0473
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017911mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.22e-2857111358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +++Y+eC+kNhAa +Ggh+vDGC+Ef++  geegt  alkCaAC+CHR+FHR+ev 
  Carubv10017911m  57 AAKYRECQKNHAALTGGHVVDGCCEFLAG-GEEGTLGALKCAACNCHRSFHRKEVY 111
                      689*************************8.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-2658110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-1659110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2459110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.95860109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.78E-18170242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-26170242IPR009057Homeodomain-like
PROSITE profilePS500719.021179243IPR001356Homeobox domain
TIGRFAMsTIGR015652.2E-25181238IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MELGGGVQDN AITSTTMIST EVKALTKPYQ DPEAKPESDL SIALFPIKKP KTRVDQAAKY  60
RECQKNHAAL TGGHVVDGCC EFLAGGEEGT LGALKCAACN CHRSFHRKEV YGHKQDQMMI  120
TPAFYSSNNS SYKAMQPRGV YPAGEIGRRT SSSSEDMKKI LSHRNHNNVD GNGMMMTRKK  180
KKRVRTKINE EQKEKMKEFA ERLGWRMQKK DEEEIDKFCK VVNLRRQVFK VWMHNNKQAM  240
KRNSNTSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-181822391875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017911m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1756491e-177AK175649.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-N07.
GenBankAL0498621e-177AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3.
GenBankAY0860201e-177AY086020.1 Arabidopsis thaliana clone 20695 mRNA, complete sequence.
GenBankCP0026861e-177CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291743.10.0zinc-finger homeodomain protein 7
SwissprotQ9SVL01e-134ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLR0FR260.0R0FR26_9BRAS; Uncharacterized protein
STRINGXP_006291743.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-122homeobox protein 28