PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017470m
Common NameCARUB_v10017470mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 370aa    MW: 41912.9 Da    PI: 7.0966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017470mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.7e-14165211354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Carubv10017470m 165 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 211
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14166221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-4175214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0016036Biological Processcellular response to phosphate starvation
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFVTFCLFFS NSLFSFPKNI KPKKKKKMYA MKEEDCLQTY HNLQDYQDQF LLHHHHHPQI  60
LPWSSSSSLP SFDPTHFPSN PTTRYSDPGH YFNRRASSSS SSFDYNDGFV SPPPSMDHHQ  120
NHLRILSEAL GPIMRRGSSF GFDGEIMGKL SAQEVMDAKA LAASKSHSEA ERRRRERINT  180
HLAKLRSILP NTTKTDKASL LAEVIQHMKE LKRQTSLITD SCQVPTESDD LTVDSSYNDE  240
EGNLVIRASF CCQDRTDLMH DVINALKSLR LRTLKAEIAT VGGRVKNVLF LSRDGEEEDL  300
DSYGDGMEGY DEGRMMSDRV SSIEEALKAV IEKCVHNNDE SNDNSNLEKS SSGSIKRQRT  360
SKMVNRSYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017470m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291336.20.0transcription factor AIG1
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLR0H4M20.0R0H4M2_9BRAS; Uncharacterized protein
STRINGXP_006291336.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Jost R, et al.
    Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
    J. Exp. Bot., 2015. 66(9): p. 2501-14
    [PMID:25697796]
  5. Vera-Sirera F, et al.
    A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
    Dev. Cell, 2015. 35(4): p. 432-43
    [PMID:26609958]
  6. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]