PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015943m
Common NameCARUB_v10015943mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 285aa    MW: 31893.1 Da    PI: 10.1797
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015943mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-09340845
                     HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Carubv10015943m  3 RRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 40
                     9************************9877777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.887142IPR004827Basic-leucine zipper domain
SMARTSM003380.0067159IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.96E-7243No hitNo description
PROSITE patternPS000360318IPR004827Basic-leucine zipper domain
PfamPF001709.9E-7340IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.0E-8345No hitNo description
PfamPF141441.0E-3482157IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
TLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLTQLEQEL QRARQQGVFI SSSGDQAHST  60
GGNGALAFDA EHSRWLEEKN RQMNELRSAL NAHAGDTELR TIVDGVMAHY EELFRIKSNA  120
AKNDVFHLLS GMWKTPAERC FLWLGGFRSS ELLKLLANQL EPMTERQVMG LNSLQQTSQQ  180
AEDALSQGME SLQQTLADTL SSGTLGSSSS DNVASYMGQM AMAMGQLGTL EGFIRQADNL  240
RLQTLQQMLR VLTTRQSARA LLAIHDYSSR LRALSSLWLA RPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015943m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299748.20.0transcription factor TGA6 isoform X4
RefseqXP_023642247.10.0transcription factor TGA6 isoform X1
RefseqXP_023642248.10.0transcription factor TGA6 isoform X1
RefseqXP_023642249.10.0transcription factor TGA6 isoform X1
RefseqXP_023642250.10.0transcription factor TGA6 isoform X1
RefseqXP_023642253.10.0transcription factor TGA6 isoform X4
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLR0GAQ40.0R0GAQ4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0430s0055.1.p0.0(Capsella grandiflora)
STRINGXP_006299748.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-163TGACG motif-binding factor 6