PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10014574m

Common Name

CARUB_v10014574mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 224aa MW: 24494.2 Da PI: 12.2783

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10014574m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00011	167	200	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N + L +l+P + +K s iLe+A++YI+ L+ Carubv10014574m 167 NRKVRVLGRLVPGC-----GKQSVPVILEEATDYIQALE 200 66666677788877.....9****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-8	147	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.868	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-7	166	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MASLISDTEP PTTSTTTDLV RRKKKRSSVS SAASSRTSAA SVSCESHTRW RSEKQQRIYS 60 AKLIQALQQV RLNNSSAEAT SSPTAQKRGR AVREAADRAL AVSARGRTLW SRAILANRIK 120 LKFRKQKRPR ATTAIPVTTT VVSSSNRSRK RRVSVLRLNK KSIPSVNRKV RVLGRLVPGC 180 GKQSVPVILE EATDYIQALE MQVRAMNSLA QLLSSYGSAP PPI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	RRKKKR
2	20	26	RRKKKRS

Functional Description ? help Back to Top
Source	Description
UniProt	bHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269\|PubMed:20023194, ECO:0000269\|PubMed:24009530}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10014574m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269\|PubMed:24009530}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641977.1	1e-156	transcription factor bHLH148
Swissprot	Q9C8Z9	1e-103	BH148_ARATH; Transcription factor bHLH148
TrEMBL	R0G7D6	1e-155	R0G7D6_9BRAS; Uncharacterized protein
STRING	XP_006298498.1	1e-156	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6157	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	2e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10014574m
Entrez Gene	17890598

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sukweenadhi J, et al. Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress. Microbiol. Res., 2015. 172: p. 7-15 [PMID:25721473]