PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014110m
Common NameCARUB_v10014110mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 343aa    MW: 39878.7 Da    PI: 4.3583
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014110mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.96.1e-1497181286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W +qe  +L+e+  ++  +l+r++l+  +W ev++k+ +e  +e+s +qC+  ++nl+++y+k+k   +k +   ss++++f++l+
  Carubv10014110m  97 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVcEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 181
                      **********************************9877999***********************977776.478999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1996182No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEQEEDEVEG DDEEPQGGGG  60
GYSRGNERFQ KRQKPNKPAV SGYDFAGPSD GKVKYDWREQ EAFVLLEVWG DRFLQLGRRS  120
LRNEDWNEVA EKVCEELRME KSETQCRRMI DNLKRKYRKE KIKVEKSGLG SSKWAFFNKL  180
DMLLCVSPKS DLGLACGVDS GEFVFMNTKV YLDKSNGFDE MMDSPGDSEE EEDDEEEVDY  240
ERKKFNDAAS YKMLADSVEK FGKIYEKMEK SKKEQMKELE KMRADFQKDL ELQKKQIVDR  300
AQSEIARLRE EEENNHGDGD AGDDESEDEE MENDSDVNLS DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014110m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207460.0AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298066.10.0trihelix transcription factor ASIL2 isoform X1
TrEMBLR0HMM00.0R0HMM0_9BRAS; Uncharacterized protein
STRINGXP_006298066.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-165Trihelix family protein