PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013979m | ||||||||
Common Name | CARUB_v10013979mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 40599 Da PI: 5.8812 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.9e-10 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Carubv10013979m 203 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 250 8**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-17 | 197 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.53E-11 | 197 | 254 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 199 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-7 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-10 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MNMDKETEQT LNYLPLGQSD PFGNGNDGSI GDFLGRYCNP QEISPLTLQS FSLNSQISEN 60 FPIAGGIRFP PYPGQFGSDR EFGVLGSQPT TQESNKSSLL DPDSVSDRVH ATKSNSRKRK 120 SIPTGNGKES PASSSLTASN SKVSGDNGGS KAGKRSKQDE ARSSKNGLEK CNSKGDNKDD 180 AKPPEAPKDY IHVRARRGQA TDSHSLAERA RREKISERMT LLQDLVPGCN RITGKAVMLD 240 EIINYVQSLQ RQVEFLSMKL ATVNPRMEFN ANSTLSTEMI QPGESLTQSL YAIACSEQRL 300 PSAYYSLGKN MPRFSDTQFP SNDGFVQAET PGFWENNDLQ SIVQMGFGDI QQQSSNNNCS 360 EPTLQMKLEP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | SRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013979m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065441 | 0.0 | AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. | |||
GenBank | AY096536 | 0.0 | AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297936.1 | 0.0 | transcription factor bHLH77 | ||||
Swissprot | Q9LK48 | 0.0 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | R0HM89 | 0.0 | R0HM89_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297936.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7406 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013979m |
Entrez Gene | 17892856 |
Publications ? help Back to Top | |||
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