PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10013564m | ||||||||
Common Name | CARUB_v10013564mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 485aa MW: 54651.9 Da PI: 6.0859 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.4 | 4.7e-52 | 67 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv++yLk+kv +k++++ ++i evdiyk+ePwdL +++k++++ewyf+s dkky +g r nrat++gyWkatgkd+e+ Carubv10013564m 67 LAPGFRFHPTDEELVSYYLKRKVLAKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREI 159 579************************999.99**************8544899999************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +l g+kktLvf++grap+g +t+Wvmheyrl Carubv10013564m 160 RR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 194 *9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-59 | 61 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.776 | 67 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-26 | 69 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 485 aa Download sequence Send to blast |
QSEIITWFAS TGNGKKESKF LAIEGESGIE NNPRTTTLFF MGRESVAVVT APPSGTAPGT 60 AAAATSLAPG FRFHPTDEEL VSYYLKRKVL AKPVRFDAIG EVDIYKHEPW DLAVFSRLKT 120 RDQEWYFYSA LDKKYGNGAR MNRATNKGYW KATGKDREIR RDIQLLGMKK TLVFHSGRAP 180 DGLRTNWVMH EYRLVEYETE KNGNLQDAYV LCRVFHKNNI GPPSGNRYAP FMEEEWADDV 240 GALIPGVDVR LRVEPQPVAN GNNQMDQSAS KSLININEPP RETVAMDIEP NQQNNHESDI 300 KPHEHNNNNA YEEDEETLKR EQTEEGERPP PVCVLNKEAP LPLLQYKRRR QNESNNNSSR 360 NTQDHCSSTT TVDNTTTLIS SSAAATNTAI SALLEFSLMG ISDKKENPQQ ALRPHKEPSP 420 HTPQASPDEK VNDLQKEVHQ MSVERETFKL EMMSAEAMIS ILQSRIDALR QENEELKKNH 480 ASGQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-46 | 66 | 219 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-46 | 66 | 219 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-46 | 66 | 219 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-46 | 66 | 219 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-46 | 66 | 219 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-46 | 66 | 219 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-46 | 66 | 219 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10013564m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY059795 | 0.0 | AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641097.1 | 0.0 | NAC domain containing protein 52 isoform X2 | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | R0G4Y1 | 0.0 | R0G4Y1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006297543.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10490.2 | 0.0 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10013564m |
Entrez Gene | 17892246 |
Publications ? help Back to Top | |||
---|---|---|---|
|