PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009292m | ||||||||
Common Name | CARUB_v10009292mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 414aa MW: 45216.3 Da PI: 4.999 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.3 | 8.3e-06 | 361 | 383 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f t C++G++C + H+ Carubv10009292m 361 KPCMYFNSTRGCRHGSNCLYQHD 383 69********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.343 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 361 | 384 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.87E-5 | 362 | 401 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSSLASHLG DDNLPPGFGG 60 PLSANEPQIK LSDIAVIKWK CSVRILLDEE WRVVAGEESN EVEAQNQREL RVLEAFYPGA 120 SSIPPNPSVP ADIDNSHYDD QQTIVIPILP VEDDDIALDS ASDLPTQSGA NVGTEPPIPD 180 ENTSTSSILP PGSDIMAALS AISNSKEQGS SMIDQDLLIK ILSNPKLVEN LVANRGSAGS 240 VSSNASSLYP SSTHEANGVV TTTPASNGQF YPQPMVTQCP PMVYPPPAPS DQHNYGAPPA 300 RDASYYKNLI QQHGGERQET PPVQQHLGYR YNLQPGGPNP EMINSNINNQ RLRDAKPKIM 360 KPCMYFNSTR GCRHGSNCLY QHDATPYQPR NLNNGNINTS EMQNAKRMRF DRD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009292m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221579 | 0.0 | AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10. | |||
GenBank | BT025557 | 0.0 | BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307667.1 | 0.0 | zinc finger CCCH domain-containing protein 6 isoform X1 | ||||
Swissprot | Q56XU4 | 0.0 | C3H6_ARATH; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | R0IPE4 | 0.0 | R0IPE4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307667.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5614 | 14 | 18 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009292m |
Entrez Gene | 17899920 |
Publications ? help Back to Top | |||
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