PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006355m | ||||||||
Common Name | CARUB_v10006355mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 313aa MW: 33575.2 Da PI: 5.9916 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.9 | 1.8e-15 | 217 | 253 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ +g+ Carubv10006355m 217 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 253 ******999************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.624 | 81 | 116 | IPR010399 | Tify domain |
SMART | SM00979 | 2.8E-14 | 81 | 116 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.0E-12 | 83 | 115 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 11.985 | 149 | 191 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.1E-14 | 149 | 191 | IPR010402 | CCT domain |
SMART | SM00401 | 1.4E-17 | 211 | 264 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.923 | 211 | 267 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-13 | 212 | 266 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-15 | 215 | 258 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.60E-16 | 216 | 262 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 217 | 244 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.4E-13 | 217 | 253 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MFGRHSQPVI IPNNQIGTGS AASAGEDHVS ASVTSGHIPY DDMDEIPHPD SIYGTGSDLI 60 PDGSQLVAHR SEGSELLVSR PPEGANQLTI SFRGQVYVFD AVGPDKVDAV LSLLGGSTEL 120 ASGQQVMELA QQNHMPAVEY QSRCSLPQRA QSLDRFRKKR NARCFEKKVR YGVRQEVALR 180 MARNKGQFTS SKMSDGAYNS GTDQDSAQDD GHPEISCTHC GISSKCTPMM RRGPSGPRTL 240 CNACGLFWAN RGTLRDLSKK TEENQSPLIK MGEAGNVADA DNSNSEPATA EEDTSLVALA 300 NGENSIMLGN HH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00451 | DAP | Transfer from AT4G24470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006355m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB035310 | 0.0 | AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285047.1 | 0.0 | GATA transcription factor 25 | ||||
Refseq | XP_023634106.1 | 0.0 | GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 0.0 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | R0H040 | 0.0 | R0H040_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285047.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 0.0 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006355m |
Entrez Gene | 17878335 |
Publications ? help Back to Top | |||
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