PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006317m
Common NameCARUB_v10006317mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 586aa    MW: 65870.9 Da    PI: 8.1263
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006317mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.25.7e-21227280155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kp++ Wt  L + F++a++++ G +kA+Pk+il +m+v++Lt+e+++SHLQkYR+
  Carubv10006317m 227 KPKITWTDGLQDLFLQAIRHI-GLDKAVPKKILAFMNVPDLTRENIASHLQKYRI 280
                      799******************.********************************6 PP
2Response_reg66.31.4e-22181331109
                      EEEESSSHHHHHHHHHHHHHTTC.....EEEEEES..SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegy.....eevaead..dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                      v++vdD+p++++++ ++lek++y     +++++ +  d+ +al +lk+++  +Dli++D  mpgm+Gl+l ++i ee  +lp iv+++  +   
  Carubv10006317m  18 VMVVDDDPVFLKVISRMLEKSKYrdpsiMDIRVIAegDPFKALSTLKHQRnnIDLIIIDYYMPGMNGLQLKRKISEEIGNLPFIVMSSDTN--K 109
                      89*****************888855555566655511456888888777778**********************99999********7666..7 PP

                      HHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                       +e l  Ga++fl+Kp++p +l k
  Carubv10006317m 110 EQESLTCGAMGFLAKPIKPIDLPK 133
                      799****************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-2615144No hitNo description
SMARTSM004487.9E-2116135IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.42E-2416143IPR011006CheY-like superfamily
PROSITE profilePS5011032.34817139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1918134IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.24E-2319131No hitNo description
PROSITE profilePS512949.561224283IPR017930Myb domain
SuperFamilySSF466894.84E-17225284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-22226284IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-24227280IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAFAESFHNQ SSVLRINVMV VDDDPVFLKV ISRMLEKSKY RDPSIMDIRV IAEGDPFKAL  60
STLKHQRNNI DLIIIDYYMP GMNGLQLKRK ISEEIGNLPF IVMSSDTNKE QESLTCGAMG  120
FLAKPIKPID LPKIYQIALT SKRNGKSWSE PNHKEACVNV PQQLKMLPEQ ANILKTKKKC  180
TSKPDSRSLI STNGSGLSTD NSRKNRKRKP NGSPGEDGES SSQPPKKPKI TWTDGLQDLF  240
LQAIRHIGLD KAVPKKILAF MNVPDLTREN IASHLQKYRI FLKKVAKQGL MSIKPGRGME  300
SMFRYTHIKD PYFNHSTTST SWYDTSLNNR SFYSKSGHGF GQSRLLSDTR APDSFNPMPH  360
NYMNGSSSTY EPHRSESGSD FTLPIQSNIS LLNQASQNEE RRSFYEPHEM ANKVSQTSQV  420
HGFGQLGPSS TIGNNFNTNM MSSFGSFTPN QPGLSHVSYG MQSFLNNENT TYNLQPHANA  480
TTHQNLELDK TNELPYNFQL DQNKQQHIGE EASTKFDLSS NFSAELNQIL SLEDDGDMTS  540
VNVNQGETSN TFTALEIHPP SFTMNPNENQ VEQDFIYSLF NTDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19226286464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006317m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634973.10.0putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0H3330.0R0H333_9BRAS; Uncharacterized protein
STRINGXP_006285010.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21