PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001833m | ||||||||
Common Name | CARUB_v10001833mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | YABBY | ||||||||
Protein Properties | Length: 243aa MW: 26506 Da PI: 8.5222 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 272.9 | 3.9e-84 | 17 | 201 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkveeenlksnvek 88 d+ sss+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsv +++++ ll+++s++++s+ + llee+++ ++n+++n+++ Carubv10001833m 17 DHISSSDQLCYVHCNFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVAVNMRALLLPSVSNIGHSFISPtpppppnLLEEMRSGGQNINMNMIM 110 7899*************************************************************99888999999***************998 PP YABBY 89 eesa.stsvssekl........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ +++++e+l +++ +e+pr+pp++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Carubv10001833m 111 SHHHgGAHHPNESLamgtrngrVDHHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 201 87652678889888999999988999***************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-68 | 21 | 201 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.33E-8 | 146 | 194 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.1E-5 | 149 | 195 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSSMSMSSSS APAYPPDHIS SSDQLCYVHC NFCDTVLAVS VPPSSLFKTV TVRCGHCSNL 60 LSVAVNMRAL LLPSVSNIGH SFISPTPPPP PNLLEEMRSG GQNINMNMIM SHHHGGAHHP 120 NESLAMGTRN GRVDHHLQEM PRPPPANRPP EKRQRVPSAY NRFIKEEIQR IKAGNPDISH 180 REAFSAAAKN WAHFPHIHFG LMADHPPTKK ANVRQQEGED VMMGSSREGF YGSAANVGVT 240 HN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001833m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF136540 | 0.0 | AF136540.1 Arabidopsis thaliana YABBY3 (YABBY3) mRNA, complete cds. | |||
GenBank | AY037186 | 0.0 | AY037186.1 Arabidopsis thaliana AT4g00180/F6N15_22 mRNA, complete cds. | |||
GenBank | BT002662 | 0.0 | BT002662.1 Arabidopsis thaliana At4g00180/F6N15_22 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288552.1 | 1e-180 | axial regulator YABBY 3 isoform X2 | ||||
Swissprot | Q9XFB1 | 1e-136 | YAB3_ARATH; Axial regulator YABBY 3 | ||||
TrEMBL | R0H942 | 1e-179 | R0H942_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288552.1 | 1e-180 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-139 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001833m |
Entrez Gene | 17883345 |
Publications ? help Back to Top | |||
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