PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.6845s0055.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 415aa MW: 46556.5 Da PI: 4.5274

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.6845s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.4	1.6e-24	318	367	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +k+++++dls++F+lpi++AAke++vc+Tv+K+iCR G+kRWP+Rk++s Cagra.6845s0055.1.p 318 TKKMKVQDLSMHFHLPIEQAAKEMKVCPTVIKKICRDGGLKRWPYRKLNS 367 799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.642	308	388	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-21	321	367	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
DADEDPYNHP YDGFGWFQNV MDDPNPNLMD MAFTENTSPS MCPPLLPLDV DQTQLFHELD 60 LSISNYDTND DFDVLSFFDD GFTTSLDMLE PLNDGPNENV NNDSQAEITY DYVNDHNNNN 120 VGETTRLEVS TRVFGDPNGP NYEIGGTSTT PVASDKDFAC DCCTMLRELV HMKEGEIMTT 180 LVIYGGIGFI CHAFLHTRLL PSDSTEPQPQ NQPEPQKIHL MDLTMEEVKK FIEDYCSQRL 240 ASGLSLVQDT NAAFYEAMSV NSIFNQSPPM LAPPTSTEAL DVSLVPLNVG RATEEPTAGM 300 QKKKKNPKTP LAAQRERTKK MKVQDLSMHF HLPIEQAAKE MKVCPTVIKK ICRDGGLKRW 360 PYRKLNSRLK KIEALKSVLC TAKSEEVKAH VEAEIERLQR EIETICSDAL KYAK*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

DADEDPYNHP YDGFGWFQNV MDDPNPNLMD MAFTENTSPS MCPPLLPLDV DQTQLFHELD  60
LSISNYDTND DFDVLSFFDD GFTTSLDMLE PLNDGPNENV NNDSQAEITY DYVNDHNNNN  120
VGETTRLEVS TRVFGDPNGP NYEIGGTSTT PVASDKDFAC DCCTMLRELV HMKEGEIMTT  180
LVIYGGIGFI CHAFLHTRLL PSDSTEPQPQ NQPEPQKIHL MDLTMEEVKK FIEDYCSQRL  240
ASGLSLVQDT NAAFYEAMSV NSIFNQSPPM LAPPTSTEAL DVSLVPLNVG RATEEPTAGM  300
QKKKKNPKTP LAAQRERTKK MKVQDLSMHF HLPIEQAAKE MKVCPTVIKK ICRDGGLKRW  360
PYRKLNSRLK KIEALKSVLC TAKSEEVKAH VEAEIERLQR EIETICSDAL KYAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.6845s0055.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290056.2	0.0	uncharacterized protein LOC17881222
TrEMBL	R0GGC1	0.0	R0GGC1_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.6845s0055.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cagra.6845s0055.1.p