PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6624s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CPP
Protein Properties Length: 338aa    MW: 37252.1 Da    PI: 4.6676
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6624s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.52e-1662102242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++kgC+Ck+skClk+YC+Cfa+g  C+++C C dC+N++e+
  Cagra.6624s0026.1.p  62 KHKGCRCKQSKCLKLYCDCFASGLLCTDDCDCADCHNNSEN 102
                          579**********************************9985 PP
2TCR50.63.8e-16147182439
                  TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +gC+Ck+++ClkkYCeCf+a++ Cs++CkC +CkN 
  Cagra.6624s0026.1.p 147 RGCKCKRTRCLKKYCECFQANVLCSDNCKCISCKNV 182
                          79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-1661102IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.41762184IPR005172CRC domain
PfamPF036381.1E-126499IPR005172CRC domain
SMARTSM011141.2E-14144185IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.1E-13147181IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTDKVDSGEI ATEKNPKELV FTKLEPSPVV PESPVEELPP NSREPSETND KTDEEGISTW  60
VKHKGCRCKQ SKCLKLYCDC FASGLLCTDD CDCADCHNNS ENFDARDTAL KRVLARNPNA  120
FNGKSFSSLI DKQCKAEPDT KLGLLSRGCK CKRTRCLKKY CECFQANVLC SDNCKCISCK  180
NVGEPDSCPA PLFLIPENSI QNALGSPMSS SPSPKLPYSR KKPPLGYTST LVPDVGDICS  240
LLVVASVSAT ATAEDQNRIC IKPDDKVDHK STELLSESES DNVEEEIQSC GRLIELIDAQ  300
YNGEEVYETD LYIEQERAVL ATFRDCLQKF IISRLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-186418412123Protein lin-54 homolog
5fd3_B1e-186418412123Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6624s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545881e-135AC254588.1 Capsella rubella clone CAP16-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092626.11e-179PREDICTED: protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-167TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLA0A178VJW11e-169A0A178VJW1_ARATH; Uncharacterized protein
STRINGCagra.6624s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-128Tesmin/TSO1-like CXC domain-containing protein