PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6496s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 528aa    MW: 59987.5 Da    PI: 6.795
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6496s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.45e-21208261155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+++ Wt  L + F++a++++ G +kA+Pk+il +m+v+ Lt+e+v+SHLQkYR+
  Cagra.6496s0001.1.p 208 KAKIIWTDSLQNMFLQAIRHI-GLDKAVPKKILAFMNVPYLTRENVASHLQKYRI 261
                          67999****************.********************************7 PP
2Response_reg61.44.7e-21181331109
                          EEEESSSHHHHHHHHHHHHHTTC.....EEEEEES..SHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
         Response_reg   1 vlivdDeplvrellrqalekegy.....eevaead..dgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                          +++ dD+p+++e++ ++lek++y     +e+++ +  d+ +al +l  +++++Dli++D  m+ m+Gl+l+++i++e  +lp+iv+++  
  Cagra.6496s0001.1.p  18 IMVLDDDPVFLEVISRMLEKSKYrdpsiMEIRVIAegDPLKALSTLklQRNNIDLIIIDYYMSCMNGLQLISKITKEFGNLPVIVMSSDT 107
                          7999***************888855555566655411456777777445555**********************99999********776 PP

                          THHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                          +    +e l  Ga+ fl+Kp++p +l k
  Cagra.6496s0001.1.p 108 N--KEQESLTCGAMCFLAKPIKPIDLPK 133
                          6..7799****************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.6E-2315144No hitNo description
SuperFamilySSF521727.54E-2116143IPR011006CheY-like superfamily
SMARTSM004481.1E-1716135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.49517139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-1818134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.26E-2019131No hitNo description
SuperFamilySSF466894.12E-17206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-23206265IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-24208261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAFGESFHNQ SSVLRINIMV LDDDPVFLEV ISRMLEKSKY RDPSIMEIRV IAEGDPLKAL  60
STLKLQRNNI DLIIIDYYMS CMNGLQLISK ITKEFGNLPV IVMSSDTNKE QESLTCGAMC  120
FLAKPIKPID LPKIYQIALT SKRNGKSWSE PNHKMLHGQD NALKTRNKCS SNTNASCLST  180
NGSRKNLKRR PNGCLVEDGE SSSQPSKKAK IIWTDSLQNM FLQAIRHIGL DKAVPKKILA  240
FMNVPYLTRE NVASHLQKYR IYLKRVAENG MVSIMSGRSS IESMFRFTHT KEPYFNNYTP  300
LPSWYDTSLN NRSFYSKTEH GFAQSRLLSD TSAPVHFNQM PYNYMNRPST FEPQHIGAGS  360
NSTLPIQRNL SVPNQPSQNE ERRSFFEQHE MANIINQTSQ VHGLGNNVNN NTMSTFGSFT  420
PNQPGLSHFS YENTAHNPQL GMTNELPYNI SNFEFDHNKQ QHEGEEASTK FDLSDELNQI  480
LSLEDDGDWF VNVDQAQDVN PDIRDRSILD TQVDDDLMNS LFNSFMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19207267464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6496s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634260.10.0putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0GQL40.0R0GQL4_9BRAS; Uncharacterized protein
STRINGCagra.6496s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21