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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.6133s0035.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
Trihelix |
| Protein Properties |
Length: 683aa MW: 75861.5 Da PI: 5.9077 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.6133s0035.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 97.2 | 1.4e-30 | 60 | 144 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++ +++f+qlea
Cagra.6133s0035.1.p 60 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 144
8*********************************************************************86555..5******985 PP
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| 2 | trihelix | 104.2 | 9.4e-33 | 446 | 530 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
Cagra.6133s0035.1.p 446 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 530
8*********************************************************************8.99999*******97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008361 | Biological Process | regulation of cell size |
| GO:0010090 | Biological Process | trichome morphogenesis |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0032876 | Biological Process | negative regulation of DNA endoreduplication |
| GO:0042631 | Biological Process | cellular response to water deprivation |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:2000037 | Biological Process | regulation of stomatal complex patterning |
| GO:2000038 | Biological Process | regulation of stomatal complex development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 683 aa
Download sequence Send
to blast |
MEQVGGGGGG NEVVEEASPI SSRPPASNNL EELMRFSAAA DDGGGGGGGG GSASSSSGNR 60
WPREETLALL RIRSDMDSTF RDATLKAPLW EHVSRKLLEL GYKRSAKKCK EKFENVQKYY 120
KRTKETRGGR HDGKAYKFFS QLEALNTTPT PLQPHPHPPS SSLDVTPLSV ANPILMPSSS 180
SSPFPIFSQP QPQTQPPQTH TVSFTPTPLP PPPPMAPTFP GVTFSSHSSS TASGMGSDDD 240
DDDDDMDVDQ ANIAGSSSRK RKRGNRGGGK MMELFEGLVR QVMQKQAAMQ RSFLEALEKR 300
EQERLDREEA WKRQEMSRLA REHEVMAQER AASASRDAAI ISLIQKITGH TIQLPPSLSS 360
QTPQVPPHQP PQPPPAAKRA HQEPQLSTAQ SQLQQPIMAI PQQQILPSPH LPHQPEQKQQ 420
QQQQQQQVQE MIVSSEQSSL LPSSSRWPKA EILALINLRS GMEPRYQDNV PKGLLWEEIS 480
TSMKRMGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPQDA KTCPYFHRLD LLYRNKVLGG 540
SGGGGGSSTS GLPQEQKQSP VSAMKPPQEG LVNVQPHESG SSEEVEPIDQ ESTPQGTEKP 600
EDLVMRELMQ QQQQQQQESM IGEYEKIEES HNYNNMEEEE EEMDEEELDE EEKSAAFEIA 660
FQSPANRGGN GHTEPPFLTM VQ*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 110 | KRSAKKCKE |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC021045 | 0.0 | AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence. |
| GenBank | AC027035 | 0.0 | AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence. |
| GenBank | AJ003215 | 0.0 | AJ003215.1 Arabidopsis thaliana GTL1 gene. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
