PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6066s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 277aa    MW: 31192.1 Da    PI: 9.8087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6066s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-1299145455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  Cagra.6066s0006.1.p  99 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 145
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.98395144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1099145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1799160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-10100148No hitNo description
SuperFamilySSF474595.63E-17100164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-14101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKPSKILKTT YILPQLPPPH SSPLPPTSKP HLHHQPSSTI LSFENAGSHV MDHEYSPTYL  60
NSIFSSKVEV EVPPHRNSEP RKETKRVQPL PRSQSNAQDH IIAERKRREK LTQRFVALSA  120
LVPGLKKMDK ASVLGDALKH IKYLQEKVGE LEEQKKERRL ESMVLVKKSK LILDDNNQSS  180
SSSSCEDGSE GMDLPEIEVR FSDKDVLIKI LCEKQKGHIA KIMAEIEKFR FSITNSSVLP  240
FGPTLDITIV AKKESDFDMT LMDVVKSLRS ALSKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1499155864Transcription factor MYC2
5gnj_B9e-1499155864Transcription factor MYC2
5gnj_E9e-1499155864Transcription factor MYC2
5gnj_F9e-1499155864Transcription factor MYC2
5gnj_G9e-1499155864Transcription factor MYC2
5gnj_I9e-1499155864Transcription factor MYC2
5gnj_M9e-1499155864Transcription factor MYC2
5gnj_N9e-1499155864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108ERKRRE
2104109RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6066s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282858.10.0transcription factor bHLH25 isoform X1
SwissprotQ9T0721e-151BH025_ARATH; Transcription factor bHLH25
TrEMBLR0F3250.0R0F325_9BRAS; Uncharacterized protein
STRINGCagra.6066s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-130bHLH family protein