PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 227aa MW: 25508.8 Da PI: 6.778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5770s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	70	116	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + + +K +K++i A++ +++ Cagra.5770s0003.1.p 70 SKACREKQRRDRLNDKFTELSSILEPG---RTPKTDKVAIINDAIRMVNH 116 5678********************8...8************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.316	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.31E-8	69	122	No hit	No description
SuperFamily	SSF47459	1.27E-12	70	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-12	70	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-8	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVSPENTNWL SDYPLIDGVF SDQNPSFPWQ IDGSSSVSVE VDGFLCDSDV IKEPGSKKRI 60 KTESCTGSSS KACREKQRRD RLNDKFTELS SILEPGRTPK TDKVAIINDA IRMVNHARDE 120 AQKLKDLNSS LQEKIKELKD EKNELRDEKH KLKTEKERIE QQLKAINTQP QPQPCFLPNQ 180 PTLSQAQAPG SKLVPFTTYP SFAMWQFMPP AAVDTSQDHV LRPPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5770s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488632	0.0	AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY085619	0.0	AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBank	BT002433	0.0	BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBank	BT006273	0.0	BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006304584.1	1e-167	transcription factor bHLH115
Swissprot	Q9C682	1e-156	BH115_ARATH; Transcription factor bHLH115
TrEMBL	R0GNJ4	1e-165	R0GNJ4_9BRAS; Uncharacterized protein
STRING	Cagra.5770s0003.1.p	1e-167	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-152	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.5770s0003.1.p

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]