PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4909s0047.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 40065.3 Da PI: 6.9969 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.8 | 3e-16 | 197 | 243 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq Cagra.4909s0047.1.p 197 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 243 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.75E-18 | 189 | 247 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-20 | 191 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.063 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-19 | 194 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-13 | 197 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-18 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MISQREEREE KKKKRVMGDK KLISSSSSIY DTRSSNHHPP SSSDEISLFL RHIFDRSSPL 60 PSYYSPATTT TSMIGVHGDP HADNSRCFLS QHPPSDSAFM TTKRVGDFSE VLVGGSSAVG 120 SGSAAACFGF SGGGNNNAQG NSSGTRVSSS SVGASGNETD EYDCESEEGG EAVVDEAPSS 180 KSGPSRTSSK RCRAAEVHNL SEKRRRSRIN EKMKALQSLI PNSNKTDKAS MLDEAIEYLK 240 QLQLQVQMLT MRNGVNLHPL CLPGTTFHPL QLSQIRPPEA TNDPLLNHTN QFASNSNAPE 300 MINTVPSSYA LEPSIRSHFG PFPLLTSPVD MSREGGLAHQ RLNLGHSNTN LTGEQAGFDG 360 QQPDLKDRLT * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4909s0047.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF319540 | 0.0 | AF319540.1 Arabidopsis thaliana SPATULA (SPT) mRNA, complete cds. | |||
GenBank | AK229267 | 0.0 | AK229267.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (AtbHLH024) / SPATULA (SPT), complete cds, clone: RAFL16-54-P05. | |||
GenBank | BT026462 | 0.0 | BT026462.1 Arabidopsis thaliana At4g36930 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283961.1 | 0.0 | transcription factor SPATULA | ||||
Swissprot | Q9FUA4 | 0.0 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | R0GJ30 | 0.0 | R0GJ30_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4909s0047.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4199 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 1e-157 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4909s0047.1.p |