 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.4686s0015.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
Trihelix |
| Protein Properties |
Length: 418aa MW: 47919.3 Da PI: 6.9977 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4686s0015.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 70.8 | 2.5e-22 | 111 | 213 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73
+Wt+ +v++Li a+ +++++ + + +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ ++
Cagra.4686s0015.1.p 111 KWTDTMVRLLIMAVFYIGDEAGLNDpidvkkksggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiAC 200
7**************88888886544555667788888899*********************************************9889 PP
trihelix 74 essstcpyfdqle 86
+++++ +++ ++
Cagra.4686s0015.1.p 201 RVVENQGLLEGMD 213
9999999988887 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13837 | 3.4E-20 | 109 | 239 | No hit | No description |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010629 | Biological Process | negative regulation of gene expression |
| GO:1900037 | Biological Process | regulation of cellular response to hypoxia |
| GO:0005634 | Cellular Component | nucleus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MESNVMFSGF SPRMLSLEMP QNPQNPQNSV QFQHPHPYTS TSADQQTQPP MIKPLYPYAS 60
APPSKPKQLS PMSGCNGDDE DRGSGSGSGC NPDDSAGTDG KRKLSQWHRM KWTDTMVRLL 120
IMAVFYIGDE AGLNDPIDVK KKSGGGGGGM LQKKGKWKSV SRAMVEKGFS VSPQQCEDKF 180
NDLNKRYKRV NDILGKGIAC RVVENQGLLE GMDHLTPKLK DEVKKLLNSK HLFFREMCAY 240
HNSCGHLGGH DQPPQQSPVT IPVQQNCFHA AEAGKMARIA EREEAEEDVE SDMAEDSESE 300
MEESEEEEEE ETTKKKRRVL TTAVKRLREE AARVVEDVGK SVWEKKEWMR RKMLEIEEKK 360
IGYEWEGVEM EKQRVKWMRY RSKKEREMEK AKLDNQRRRL ETERMVLMLR RSEIELNE
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 313 | 317 | KKKRR |
| 2 | 313 | 318 | KKKRRV |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATAC010927 | 0.0 | AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence. |
| GenBank | AY091028 | 0.0 | AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G10040.1 | 0.0 | sequence-specific DNA binding transcription factors |
