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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.4686s0011.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
Trihelix |
| Protein Properties |
Length: 472aa MW: 53890.9 Da PI: 7.2465 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4686s0011.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 95 | 7e-30 | 90 | 176 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
Cagra.4686s0011.1.p 90 RWPRQETLMLLEVRSRLDHKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 176
8*************************************999*****************************98.77888********85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MEDHHHQNHQ VQYGIAQPSL HFSSDLFGFN LVSAPDQHHR PHLTDHEISF LPRGIQGLTV 60
AGNNSNSIVA STSCARGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDHKF KESNQKGPLW 120
DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE 180
SKDSVSCYDN SQFIMTNALH NFHAPNIHHN AVSHIHQNPL SNNTQSLSIS NNLNSSSELD 240
ISSSSEGNVS TRSEGMNWKE KIKEFIGIHI ERLIEKQDFW LEKLVKTVED KEHQRMVKEE 300
EWKRVEAARI EKERSLWTKE RERMEARDVA VIEALQYLTG KALIRPNSSS PTERINGNIS 360
DQTMADEENK SKMENKIMSK KRKEKWSSHG GNQLRIKENT MMIYDNQEDP SCDVEQGHHE 420
GYSPSNSKEG NPSCGIAMAA STNCFPMLVG DGDQNSWEGY GLKLRKEDNL Q*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
