 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.4190s0013.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
Trihelix |
| Protein Properties |
Length: 301aa MW: 35405.5 Da PI: 6.7511 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4190s0013.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 83.9 | 2.1e-26 | 47 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ +e+++Lie+r e+++++ ++k++k lWe +s+km+++ f rsp+qCk+kw+nl +r+k ++++e + +++++p++d+++
Cagra.4190s0013.1.p 47 QWSVEETKELIEIRGELDQTFMETKRNKLLWEVISNKMKDKSFPRSPEQCKCKWKNLVTRFKGCETMEAET---ARQQFPFYDDMQ 129
7********************************************************************84...56679*****96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MDGHQHHHQL HHLQYLNKHH LQHPHPQSQS QTPEIASPVV GGDRFPQWSV EETKELIEIR 60
GELDQTFMET KRNKLLWEVI SNKMKDKSFP RSPEQCKCKW KNLVTRFKGC ETMEAETARQ 120
QFPFYDDMQI IFTTRMQRML WAESEGGGGG GGGGGGGTSG TARKREYSSD EEEENVNEEQ 180
VDVSNDPKIL NPKKNIAKKR KGGSNSINSN NGVREVLEEF MRHQIRMESE WREGWEAREK 240
ERAEKEEEWR RKMEELEKER VTMERMWRDR EEQRRSREEM RAEKRDSLIN ALLAKLTRDD 300
*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 191 | 200 | PKKNIAKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC003028 | 1e-180 | AC003028.3 Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete sequence. |
| GenBank | AF453582 | 1e-180 | AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds. |
| GenBank | CP002685 | 1e-180 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
