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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.4082s0018.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
Trihelix |
Protein Properties |
Length: 329aa MW: 38757.2 Da PI: 6.6245 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.4082s0018.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 75.7 | 7.7e-24 | 53 | 135 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++ f rs++qCk+kw+nl +ryk+++++e + ++++p++++++
Cagra.4082s0018.1.p 53 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKAFVRSAEQCKSKWKNLVTRYKACETTEADA---IRQHFPFYNEIQ 135
7********************************************************************95...55679***9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP QSTTAAMDLG GGGGGGGGER IPQWSIEETK 60 ELLGIREELD QTFMETKRNK LLWEVVAAKM ADKAFVRSAE QCKSKWKNLV TRYKACETTE 120 ADAIRQHFPF YNEIQSIFAA RMQRMLWSEA TEPSTSSKRK HNQFSSDEEE EEEEEADEPN 180 QEINEELLSL VETQKKETEV MTTSVSTNPR KRAKKGKGVA KAETAGSTIK EVLEEFMRQT 240 VKMEKEWRDA WEMKEREREK REREWRRRMA ELEEERAAAE RRWMEREEER RLREEARAQK 300 RDTLIDALLN KFNRDHNNDH HHGHSQGF*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY271677 | 0.0 | AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds. |
GenBank | BT028926 | 0.0 | BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds. |