PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3793s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 19701.6 Da PI: 4.1329 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.7 | 1.8e-17 | 15 | 99 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +s+ l +p ++ e+ + + +kt +l+ + g+ W+v + + k+++++++kGW +Fv +n+Lk+g+++ F +dg +++ v++f Cagra.3793s0014.1.p 15 LSQYSSDYLLIPCSYYEHL--PRRLPKTAILMGTGGKIWKVAM--KSKQEQVYFEKGWANFVADNDLKDGEVLSFVFDG--YRRYEVSIFG 99 556678889******9544..456899****************..999999*************************876..4445777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.63E-22 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.83E-19 | 8 | 98 | No hit | No description |
PROSITE profile | PS50863 | 13.803 | 8 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-21 | 8 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-14 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-14 | 12 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF00484 | 4.9E-5 | 55 | 160 | IPR001765 | Carbonic anhydrase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004089 | Molecular Function | carbonate dehydratase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MASGDVLPRF FSVYLSQYSS DYLLIPCSYY EHLPRRLPKT AILMGTGGKI WKVAMKSKQE 60 QVYFEKGWAN FVADNDLKDG EVLSFVFDGY RRYEVSIFGH GGCKEIRAAV EVEEISDGTE 120 SEKSDDSLDS VTQAEEINDD EETKRDTSLD SVTTQVEEIS DDETKNDKDY SPES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-19 | 9 | 103 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3793s0014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC018907 | 3e-35 | AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 3e-35 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414513.1 | 9e-86 | PREDICTED: B3 domain-containing protein At3g06220-like isoform X2 | ||||
Refseq | XP_019093818.1 | 7e-86 | PREDICTED: B3 domain-containing protein At3g06220-like | ||||
Swissprot | Q1PES7 | 5e-70 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
TrEMBL | R0H1D4 | 1e-73 | R0H1D4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3793s0014.1.p | 1e-125 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 2e-72 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3793s0014.1.p |
Publications ? help Back to Top | |||
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