 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.3631s0005.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
Family |
Trihelix |
Protein Properties |
Length: 456aa MW: 49107.8 Da PI: 10.3426 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.3631s0005.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 46.4 | 1.1e-14 | 87 | 174 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++ +qCk++++ ++k+yk++k + + + +s++++fd+l+
Cagra.3631s0005.1.p 87 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKLD 174
7*************************************8766667789999******************999987..66678******98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MEDDEDIRSR GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPANSSQKD PDALALALLP 60 IQASGGSGGG ANSSSGRPTG GGGREDCWSE GATAVLIDAW GERYLELSRG NLKQKHWKEV 120 AEIVSSREDY GKIPKTDIQC KNRIDTVKKK YKQEKVRIAT GGGRSRWVFF DKLDRLIGST 180 AKISTATPGV SGGGGPGVGG GLHKIPMGIP MGTRSNLYHH QAKAAAATPS FNNLDRLIGA 240 TARVSAASFG GSSGGGGGSV NVPMGIPMSS RSSPFGQQGR TLPQQSRTLP QQQQQGMVVK 300 RCNESKRWRF RKRNASESDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKR QDGDGVGNKW 360 RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKEME LQRMQFFVKT QLEISQLKQQ 420 HGGRLGNTTS NDHHSRKNNN INGIVNNSNN NVGNN*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP000600 | 0.0 | AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2. |
GenBank | AY072187 | 0.0 | AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds. |
GenBank | AY113853 | 0.0 | AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G14180.1 | 0.0 | sequence-specific DNA binding transcription factors |