PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ARF

Protein Properties

Length: 210aa MW: 23214.2 Da PI: 9.7467

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.24523s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.4	5.2e-13	27	71	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 r +++r++lt+GW++Fv+ ++L +gD+vvF+ ++s e++++v+r+ Cagra.24523s0002.1.p 27 RTTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RKSADEMFIGVRRA 71 667889***********************..44788899*997 PP
2	Auxin_resp	90.4	3.1e-30	126	208	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++ +FevvY+P a++s+Fvvk+e+ve+++ + +++G+R+kma+etedss++++ +G+v ++ + ++ W++S+W++L+ Cagra.24523s0002.1.p 126 AINRAAQGLPFEVVYYPTAGWSDFVVKAEDVEASMAIFWTPGTRVKMAMETEDSSRITWfQGIVFSTYQ-ETGPWRGSPWKQLQ 208 67899****************************************************9**999.888*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.024	1	72	IPR003340	B3 DNA binding domain
CDD	cd10017	2.25E-7	25	66	No hit	No description
SuperFamily	SSF101936	2.35E-10	26	72	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.9E-10	27	71	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.7E-12	27	72	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF06507	5.1E-25	126	208	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MQRPHLWLIA SATSLHCCWH KGSSSSRTTP RRHLLTTGWS KFVNNKKLIA GDSVVFMRKS 60 ADEMFIGVRR APISSNVGGT SFYGGDEYCS YYQSSGGVAK EDDGSAKKGF RRTGKGKLTA 120 EAVSEAINRA AQGLPFEVVY YPTAGWSDFV VKAEDVEASM AIFWTPGTRV KMAMETEDSS 180 RITWFQGIVF STYQETGPWR GSPWKQLQV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.24523s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007143	0.0	AC007143.5 Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete sequence.
GenBank	AK230014	0.0	AK230014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-53-A06.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	JF729200	0.0	JF729200.1 Arabidopsis thaliana ecotype C24 mitochondrion, complete genome.
GenBank	JF729201	0.0	JF729201.1 Arabidopsis thaliana ecotype Col-0 mitochondrion, complete genome.
GenBank	JF729202	0.0	JF729202.1 Arabidopsis thaliana ecotype Landsberg erecta mitochondrion, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302016.2	1e-109	auxin response factor 17
Swissprot	P92530	1e-105	M940_ARATH; Uncharacterized mitochondrial protein AtMg00940
TrEMBL	A0A178U5R5	1e-125	A0A178U5R5_ARATH; Auxin response factor
STRING	Cagra.24523s0002.1.p	1e-155	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM580	27	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-100	auxin response factor 17

Link Out ? help Back to Top
Phytozome	Cagra.24523s0002.1.p

Publications ? help Back to Top
Unseld M,Marienfeld JR,Brandt P,Brennicke A The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet., 1997. 15(1): p. 57-61 [PMID:8988169]