PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.23907s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 642aa MW: 71606.1 Da PI: 5.016 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.7e-18 | 49 | 99 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+ q++eLe+++e n+ p+ ++r eL ++l+L+ rqVk+WFqN+R +ek Cagra.23907s0014.1.p 49 RHTAFQIQELETFYEGNPLPTSDQRNELGQRLNLEARQVKFWFQNKRSQEK 99 56899*******************************************998 PP | |||||||
2 | START | 143 | 3e-45 | 193 | 398 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 ela++a++el ++ + ++p+W+++ +d+v + + +e +r +g+v m + +lv++l+d++ +W +a +++ v s + Cagra.23907s0014.1.p 193 ELANTAMDELKALGERNCPFWTLDL---RNDIVGPPE-----CAVESSRCIGLVRMGSSTLVKTLMDTG-KWVDVFA--SIVHVASAQk 270 57899********************...444444444.....8**************************.*******..5555555555 PP ...........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 89 ...........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 g lq+++ae+q++splvp R ++f+Ry++ lg+g+wv+vd +d+ ++p+ ++ +++lpSg++i++++ng+s+vt Cagra.23907s0014.1.p 271 lirptysgarsGSLQQIQAEFQVMSPLVPkRQVTFLRYCKDLGDGSWVVVD-VTDPAEYPT-FFPYGASNRLPSGLIIRDMANGYSEVT 357 55555777*******************************************.355666666.89************************* PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 w+e+++++++++h+l+++l+ sg+ gak+w+ tlqr+ce+ Cagra.23907s0014.1.p 358 WIEQAEYNKNHIHQLYQPLIASGIGLGAKRWLTTLQRYCES 398 ***************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-16 | 35 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-18 | 39 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.839 | 41 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-13 | 43 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.90E-14 | 45 | 99 | No hit | No description |
Pfam | PF00046 | 3.6E-15 | 49 | 99 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 35.336 | 184 | 401 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.01E-23 | 187 | 399 | No hit | No description |
CDD | cd08875 | 3.13E-77 | 189 | 397 | No hit | No description |
SMART | SM00234 | 3.8E-31 | 193 | 398 | IPR002913 | START domain |
Pfam | PF01852 | 5.1E-41 | 193 | 398 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.61E-17 | 420 | 633 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006349 | Biological Process | regulation of gene expression by genetic imprinting | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0031047 | Biological Process | gene silencing by RNA | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MDGQGDFNEF GNIFKTNLGS AEDEESNIID AMNCDNDGDD GGRMRRSFRH TAFQIQELET 60 FYEGNPLPTS DQRNELGQRL NLEARQVKFW FQNKRSQEKV NKERLENICL IENNERLLGA 120 QDELRMLQIS DYGDVDYKID KYSNFPFNAL QVQVTAPEQL PSSSSNPIRN ATPQLDSGRG 180 YISAKKDEAK LLELANTAMD ELKALGERNC PFWTLDLRND IVGPPECAVE SSRCIGLVRM 240 GSSTLVKTLM DTGKWVDVFA SIVHVASAQK LIRPTYSGAR SGSLQQIQAE FQVMSPLVPK 300 RQVTFLRYCK DLGDGSWVVV DVTDPAEYPT FFPYGASNRL PSGLIIRDMA NGYSEVTWIE 360 QAEYNKNHIH QLYQPLIASG IGLGAKRWLT TLQRYCESLS TLSATNMGEI IPGMSAKGAN 420 ELMKLTERMT RNYYTGITSS TVGKWEMIEV ENVAQNMRFM TRKSLNEPGE YTGIVLSAAI 480 SVWFPVNQRT LFAFLNHLGS RHEWDSLTLT SMEEIFRIQK ANRHENTISL LRVIGDENDM 540 LVLQEVWNDA SGAVLVYAPV ETSSIEAVNR GENSNYVPLL PSGFSIVPDG STGGGCLLTL 600 GLQILASTNP TALLTQGFVK IVEGLMLHTI DKIKSALHKQ P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of time of flowering through the photoperiod flowering pathway. May repress FT. {ECO:0000269|PubMed:17189287}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.23907s0014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB367817 | 0.0 | AB367817.1 Turritis glabra FWA mRNA for homeodomain-containing transcription factor FWA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285631.1 | 0.0 | homeobox-leucine zipper protein HDG6 isoform X1 | ||||
Swissprot | Q9FVI6 | 0.0 | FWA_ARATH; Homeobox-leucine zipper protein HDG6 | ||||
TrEMBL | R0GNU9 | 0.0 | R0GNU9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.23907s0014.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20953 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25530.1 | 0.0 | FLOWERING WAGENINGEN |
Link Out ? help Back to Top | |
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Phytozome | Cagra.23907s0014.1.p |