PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2350s0104.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 310aa    MW: 32538.7 Da    PI: 4.4708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2350s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05175196223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C++C++ F ++     H+r H
  Cagra.2350s0104.1.p 175 VCHICDRAFGSWKAVFGHMRAH 196
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKAVDDTDGE RDASDEQLSD DESETREIVL GLPALSITSR IFGDLSSVSE TDEEEAPMKE  60
QDEAALKEQE EACSKEQEEA CSKEQEEAAL KNQEQVRLNE QAVVAAELVM AMAEEAVMKG  120
KSDEGGSGGK MKKKKSRPRT STKTDDEADG SGTGEAKKPK KKGSQLNHPP KGPPVCHICD  180
RAFGSWKAVF GHMRAHRDRS YQGFLPPPTF SAAAEMIAVP GRKSAFVLLT AGGGSSGGNI  240
NASGGGISDE ASASGVGRVP GEGGGRGLGL DLNAEPVEKG EEATESGSIA KFDLNKSPPK  300
DDDDEKNGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2350s0104.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285977.10.0uncharacterized protein LOC17880279
TrEMBLR0H2J10.0R0H2J1_9BRAS; Uncharacterized protein
STRINGCagra.2350s0104.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.13e-59C2H2 family protein