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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.2236s0005.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
bHLH |
| Protein Properties |
Length: 278aa MW: 30476.8 Da PI: 6.0613 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.2236s0005.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 23 | 1.4e-07 | 50 | 94 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
+ erE+ RRd++++ f eL l ++ +K +K++iL+ +++ +k+
Cagra.2236s0005.1.p 50 KAEREKLRRDKLKEQFLELGNALDPN----RPKSDKVSILTDTIQMLKD 94
589********************997....79************99885 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDQSKKPKTC SDSDFADDSS ASSSSSSTSG HNLRAEIVVE VNKDAVCSRK AEREKLRRDK 60
LKEQFLELGN ALDPNRPKSD KVSILTDTIQ MLKDVMNQVE RLKAEYATLS QESRELIQDK 120
SELREEKATL KSDIEILNAQ YQHRVRSMVP WIPHYTYPIP VVALSQGQST FIPYSASGVN 180
PLIEQASIQQ RSSSSGASSK QNSKSKSFSL DQGNDHKDDV GLELELKIHA SPLAQQDVSG 240
KENKESLTPT ANSSNSYSSS QTVQDSSPGG VNDILKA*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493720 | 1e-165 | AB493720.1 Arabidopsis thaliana At4g36060 mRNA for hypothetical protein, partial cds, clone: RAAt4g36060. |
| GenBank | AF251696 | 1e-165 | AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
Genet. Res., 2006. 88(1): p. 45-56
[PMID:17014743] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786] - Tanabe N, et al.
The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana.
J. Plant Res., 2019. 132(1): p. 93-105
[PMID:30417276]
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